Genetic Analysis Database - NRDA
Data Set (DS) | Southeast Fisheries Science Center (SEFSC)GUID: gov.noaa.nmfs.inport:26491 | Updated: August 9, 2022 | Published / External
Item Identification
| Title: | Genetic Analysis Database - NRDA |
|---|---|
| Status: | In Work |
| Abstract: |
Samples of skin and other tissues are collected from marine mammals along the North-Central Gulf of Mexico from live animals through remote biopsy or live-capture or stranded animals during 2010-2014. DNA is extracted from these samples, sequenced, and analyzed using a variety of methods to support phylogenetic studies, stock delineation studies, and a variety of other analyses related to cetacean genetics associated with the Natural Resources Damage Assessment associated with the Deepwater Horizon oil spill. These data sets include the sequence and other genetic data collected from these samples along with analytical results. These data support stock delineation studies and a variety of other analyses related to cetacean genetics and are incorporated into the Deepwater Horizon Damage Assessment and Restoration Plan. |
| Purpose: |
To study genetic relationships of cetacean populations in the Gulf of Mexico in support of the injury assessment for the Deepwater Horizon oil spill. |
| Notes: |
Databases of genetic data collected from marine mammal tissue samples including sexes, genetic sequence data, microsattellite markers, sNPs, etc. Collected data are in a variety of formats with variable levels of QA/QC depending upon the project status. |
Physical Location
| Organization: | Southeast Fisheries Science Center |
|---|---|
| City: | Miami |
| State/Province: | FL |
| Country: | USA |
| Location Description: |
Location Of The Main Office Of The South East Fisheries Science Center |
Data Set Information
| Data Set Scope Code: | Data Set |
|---|---|
| Data Presentation Form: | Table (digital) |
Support Roles
Data Steward
| Date Effective From: | 2010 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Garrison, Lance |
| Address: |
75 Virginia Beach Dr Miami, FL 33149 |
| Email Address: | Lance.Garrison@noaa.gov |
| Phone: | 305-361-4488 |
| Fax: | 305-361-4478 |
| Business Hours: | 8:00 AM - 4:30 PM EST/EDT |
| Contact Instructions: |
Contact by email preferred. |
Distributor
| Date Effective From: | 2010 |
|---|---|
| Date Effective To: | |
| Contact (Organization): | Southeast Fisheries Science Center (SEFSC) |
| Address: |
75 Virginia Beach Drive Miami, FL 33149 USA |
| Phone: | (305)361-5761 |
| URL: | https://www.fisheries.noaa.gov/about/southeast-fisheries-science-center |
| Business Hours: | 8:00 a.m. - 4:30 p.m. EST |
Metadata Contact
| Date Effective From: | 2010 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Rosel, Patricia |
| Address: |
646 Cajundome Blvd Lafayette, LA 70506-4291 |
| Email Address: | patricia.rosel@noaa.gov |
| Phone: | 337-291-2123 |
| Fax: | 337-291-2106 |
| Contact Instructions: |
Contact by email preferred. |
Point of Contact
| Date Effective From: | 2010 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Garrison, Lance |
| Address: |
75 Virginia Beach Dr Miami, FL 33149 |
| Email Address: | Lance.Garrison@noaa.gov |
| Phone: | 305-361-4488 |
| Fax: | 305-361-4478 |
| Business Hours: | 8:00 AM - 4:30 PM EST/EDT |
| Contact Instructions: |
Contact by email preferred. |
Extents
| Currentness Reference: | Ground Condition |
|---|
Extent Group 1
Extent Group 1 / Geographic Area 1
| W° Bound: | -98 | |
|---|---|---|
| E° Bound: | -80.5 | |
| N° Bound: | 31 | |
| S° Bound: | 24.5 | |
| Description |
Gulf Of Mexico |
|
Extent Group 1 / Time Frame 1
| Time Frame Type: | Continuing |
|---|---|
| Start: | 2010 |
Access Information
| Security Class: | Sensitive |
|---|---|
| Data Access Procedure: |
The data will be available from a public web server once an access methodology has been developed. |
| Data Access Constraints: |
Waiver Needed |
Data Quality
| Quality Control Procedures Employed: |
Intensive QA/QC procedures are employed during the processing and handling of samples to avoid cross-contamination. Individual sequences are reviewed and verified against standards to ensure data integrity and quality. QA/QC procedures may vary among projects based upon the study goals of individual contributors. |
|---|
Data Management
| Have Resources for Management of these Data Been Identified?: | No |
|---|---|
| Approximate Percentage of Budget for these Data Devoted to Data Management: | 0 |
| Do these Data Comply with the Data Access Directive?: | No |
| Is Access to the Data Limited Based on an Approved Waiver?: | Yes |
| If Distributor (Data Hosting Service) is Needed, Please Indicate: | No |
| Approximate Delay Between Data Collection and Dissemination: | 365 |
| If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed: |
N/A |
| Actual or Planned Long-Term Data Archive Location: | To Be Determined |
| If To Be Determined, Unable to Archive, or No Archiving Intended, Explain: |
The archival process is currently under development. |
| Approximate Delay Between Data Collection and Archiving: | 365 |
| How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?: |
The data resides on a secure government network requiring multi-factor authentication for network access. |
Lineage
Process Steps
Process Step 1
| Description: |
Tissue samples along with information about their collection are contributed by researchers. The DNA is extracted from these tissues and DNA sequence or other data are collected. The resulting data are incorporated into analyses of species identification, sex determination, or stock delineation. |
|---|
Catalog Details
| Catalog Item ID: | 26491 |
|---|---|
| GUID: | gov.noaa.nmfs.inport:26491 |
| Metadata Record Created By: | Lee M Weinberger |
| Metadata Record Created: | 2015-08-17 16:20+0000 |
| Metadata Record Last Modified By: | SysAdmin InPortAdmin |
| Metadata Record Last Modified: | 2022-08-09 17:11+0000 |
| Metadata Record Published: | 2021-04-29 |
| Owner Org: | SEFSC |
| Metadata Publication Status: | Published Externally |
| Do Not Publish?: | N |
| Metadata Last Review Date: | 2021-04-29 |
| Metadata Review Frequency: | 1 Year |
| Metadata Next Review Date: | 2022-04-29 |