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SEFSC Metadata Library > POPULATION & ECOSYSTEMS MONITORING DIV > Life History Studies > Age, Growth and Reproduction Research Data > Squalus cubensis Reproduction Data >

Squalus Cubensis data in .xlsx file

Entity (ENT)  |  Southeast Fisheries Science Center (SEFSC)
GUID: gov.noaa.nmfs.inport:31634  |  Updated: October 17, 2023  |  Published / External 

Item Identification

Title: Squalus Cubensis data in .xlsx file
Status: Completed
Abstract:

Reproductive data from Squalus cubensis (Cuban dogfish) were opportunistically collected from 2005-2012. Data include those necessary to examine reproductive cycle, fecundity, gestation period, and size at maturity for the species.

This is a multi tabbed .xlsx file.

In general each tab in this file is represented by a different .csv file, with the only difference being that in the .csv files, csv files containing data on males do not have the columns only to do with females while csv files containing data on females do not have have columns only having to do with males.

Physical Location

Organization: National Centers for Environmental Information - Silver Spring, Maryland
City: Silver Spring
State/Province: MD

Entity Information

Entity Type: Spreadsheet
Description:

Reproductive data from Squalus cubensis (Cuban dogfish) were opportunistically collected from 2005-2012. Data include those necessary to examine reproductive cycle, fecundity, gestation period, and size at maturity for the species.

Data Attributes

Attribute Summary

Rubric Score Primary Key? Name Type Description
100
 Specimen Number NUMBER Unique specimen identifier
100
 Genus CHAR taxonomic rank used in the biological classification of living and fossil organisms in biology. In the hierarchy of biological classification, genus comes above species and below family.
100
 Species CHAR follows genus in the taxonomic hierarchy
100
 Date NUMBER Specific date that the specimen was captured: Month/Day/Year represented as numbers (MM/DD/YYYY)
100
 Month CHAR Abbreviation for the month that the specimen was captured. (Jan=January, Oct-October, Nov-November)
100
 Lat NUMBER Decimal degrees latitude at capture site.
100
 Lon NUMBER Decimal degrees longitude at capture site.
100
 Depth NUMBER depth captured, meters
100
 PCL NUMBER precaudal length, mm
100
 FL NUMBER fork length, mm
100
 TL NUMBER natural total length, mm
100
 STL NUMBER stretch total length, mm
100
 Weight NUMBER whole weight in kg
100
 Sex CHAR male or female
100
 Maturity NUMBER 1 = immature, 2 = mature
100
 Bin Mat NUMBER 0 = immature, 1 = mature
100
 Pregnant? CHAR yes or no
100
 Liver Wt NUMBER in grams
100
 Right Uterus NUMBER width in mm (if not pregnant)
100
 Right Oviducal NUMBER width in mm
100
 Ovary Weight NUMBER in grams
100
 # Vitellogenic NUMBER number of vitellogenic follicles in right ovary
100
 # Selected NUMBER number of selected follicles in right ovary
100
 Max Ova Diameter NUMBER diameter of largest follicle in right ovary
100
 # Atretic NUMBER number of atretic follicles in right ovary
100
 Sel 1 NUMBER diameter of 6 selected follicles in right ovary
100
 Sel 2 NUMBER diameter of 6 selected follicles in right ovary
100
 Sel 3 NUMBER diameter of 6 selected follicles in right ovary
100
 Sel 4 NUMBER diameter of 6 selected follicles in right ovary
100
 Sel 5 NUMBER diameter of 6 selected follicles in right ovary
100
 Sel 6 NUMBER diameter of 6 selected follicles in right ovary
100
 Total #Pups NUMBER number of embryos both uteri
100
 Pups Right NUMBER number of embryos in right uterus
100
 Pups Left NUMBER number of embryos in left uterus
100
 Samples Taken CHAR May include, vertebrae, second dorsal spine, fin clip, stomach, entire reproductive system, skin/denticle sample, liver, muscle tissue
100
 Comments CHAR any additional observations.
100
 Station/Source NUMBER links to mature female
100
 # pups NUMBER total number of embryos for that female
100
 Pups rt NUMBER number of embryos right uterus
100
 Wt g NUMBER grams
100
 Pups L NUMBER total number of pups in left uterus
100
 COL NUMBER clasper outside length mm
100
 CIL NUMBER clasper inside length mm
100
 Calcified? CHAR are claspers fully calcified, yes or no
100
 Rotate ? CHAR do claspers rotate 180 degrees, yes or no
100
 Rhip Opens? CHAR does rhipidion open fully, yes or no
100
 Siphon Sacs? CHAR do siphon sacs inflate fully, yes or no
100
 Rt testis L NUMBER length of right testis, mm
100
 RT testis W NUMBER width of right testis, mm
100
 Epidid Width NUMBER width of right epididymis, mm
100
 R testis Wt NUMBER weight of right testis, grams
100
 Sperm? CHAR seminal fluid present, yes or no

Attribute Details

Specimen Number

CC ID: 309129
Seq. Order: 1
Data Storage Type: NUMBER
Max Length: 36
Min Length: 18
Required: No
Primary Key: No
Status: Active
Description:

Unique specimen identifier

Genus

CC ID: 309130
Seq. Order: 2
Data Storage Type: CHAR
Max Length: 7
Required: No
Primary Key: No
Status: Active
Description:

taxonomic rank used in the biological classification of living and fossil organisms in biology. In the hierarchy of biological classification, genus comes above species and below family.

Species

CC ID: 309131
Seq. Order: 3
Data Storage Type: CHAR
Max Length: 8
Required: No
Primary Key: No
Status: Active
Description:

follows genus in the taxonomic hierarchy

Date

CC ID: 309132
Seq. Order: 4
Data Storage Type: NUMBER
Max Length: 10
Required: No
Primary Key: No
Status: Active
Description:

Specific date that the specimen was captured: Month/Day/Year represented as numbers (MM/DD/YYYY)

Month

CC ID: 309133
Seq. Order: 5
Data Storage Type: CHAR
Max Length: 4
Required: No
Primary Key: No
Status: Active
Description:

Abbreviation for the month that the specimen was captured. (Jan=January, Oct-October, Nov-November)

Lat

CC ID: 327234
Seq. Order: 6
Data Storage Type: NUMBER
Max Length: 8
Required: No
Primary Key: No
Status: Active
Description:

Decimal degrees latitude at capture site.

Lon

CC ID: 327235
Seq. Order: 7
Data Storage Type: NUMBER
Max Length: 9
Required: No
Primary Key: No
Status: Active
Description:

Decimal degrees longitude at capture site.

Depth

CC ID: 327236
Seq. Order: 8
Data Storage Type: NUMBER
Max Length: 11
Required: No
Primary Key: No
Status: Active
Description:

depth captured, meters

PCL

CC ID: 327237
Seq. Order: 9
Data Storage Type: NUMBER
Max Length: 3
Required: No
Primary Key: No
Status: Active
Description:

precaudal length, mm

FL

CC ID: 327238
Seq. Order: 10
Data Storage Type: NUMBER
Max Length: 3
Required: No
Primary Key: No
Status: Active
Description:

fork length, mm

TL

CC ID: 327239
Seq. Order: 11
Data Storage Type: NUMBER
Max Length: 3
Required: No
Primary Key: No
Status: Active
Description:

natural total length, mm

STL

CC ID: 327240
Seq. Order: 12
Data Storage Type: NUMBER
Max Length: 3
Required: No
Primary Key: No
Status: Active
Description:

stretch total length, mm

Weight

CC ID: 327241
Seq. Order: 13
Data Storage Type: NUMBER
Max Length: 5
Required: No
Primary Key: No
Status: Active
Description:

whole weight in kg

Sex

CC ID: 327242
Seq. Order: 14
Data Storage Type: CHAR
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

male or female

Maturity

CC ID: 327243
Seq. Order: 15
Data Storage Type: NUMBER
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

1 = immature, 2 = mature

Bin Mat

CC ID: 327244
Seq. Order: 16
Data Storage Type: NUMBER
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

0 = immature, 1 = mature

Pregnant?

CC ID: 327245
Seq. Order: 17
Data Storage Type: CHAR
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

yes or no

Liver Wt

CC ID: 327246
Seq. Order: 18
Data Storage Type: NUMBER
Max Length: 5
Required: No
Primary Key: No
Status: Active
Description:

in grams

Right Uterus

CC ID: 327247
Seq. Order: 19
Data Storage Type: NUMBER
Max Length: 5
Required: No
Primary Key: No
Status: Active
Description:

width in mm (if not pregnant)

Right Oviducal

CC ID: 327248
Seq. Order: 20
Data Storage Type: NUMBER
Max Length: 4
Required: No
Primary Key: No
Status: Active
Description:

width in mm

Ovary Weight

CC ID: 327249
Seq. Order: 21
Data Storage Type: NUMBER
Max Length: 5
Required: No
Primary Key: No
Status: Active
Description:

in grams

# Vitellogenic

CC ID: 327250
Seq. Order: 22
Data Storage Type: NUMBER
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

number of vitellogenic follicles in right ovary

# Selected

CC ID: 327251
Seq. Order: 23
Data Storage Type: NUMBER
Max Length: 2
Required: No
Primary Key: No
Status: Active
Description:

number of selected follicles in right ovary

Max Ova Diameter

CC ID: 327252
Seq. Order: 24
Data Storage Type: NUMBER
Max Length: 5
Required: No
Primary Key: No
Status: Active
Description:

diameter of largest follicle in right ovary

# Atretic

CC ID: 327253
Seq. Order: 25
Data Storage Type: NUMBER
Max Length: 3
Required: No
Primary Key: No
Status: Active
Description:

number of atretic follicles in right ovary

Sel 1

CC ID: 327254
Seq. Order: 26
Data Storage Type: NUMBER
Max Length: 3
Required: No
Primary Key: No
Status: Active
Description:

diameter of 6 selected follicles in right ovary

Sel 2

CC ID: 327255
Seq. Order: 27
Data Storage Type: NUMBER
Max Length: 4
Required: No
Primary Key: No
Status: Active
Description:

diameter of 6 selected follicles in right ovary

Sel 3

CC ID: 327256
Seq. Order: 28
Data Storage Type: NUMBER
Max Length: 4
Required: No
Primary Key: No
Status: Active
Description:

diameter of 6 selected follicles in right ovary

Sel 4

CC ID: 327257
Seq. Order: 29
Data Storage Type: NUMBER
Max Length: 4
Required: No
Primary Key: No
Status: Active
Description:

diameter of 6 selected follicles in right ovary

Sel 5

CC ID: 327258
Seq. Order: 30
Data Storage Type: NUMBER
Max Length: 3
Required: No
Primary Key: No
Status: Active
Description:

diameter of 6 selected follicles in right ovary

Sel 6

CC ID: 327259
Seq. Order: 31
Data Storage Type: NUMBER
Max Length: 3
Required: No
Primary Key: No
Status: Active
Description:

diameter of 6 selected follicles in right ovary

Total #Pups

CC ID: 327260
Seq. Order: 32
Data Storage Type: NUMBER
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

number of embryos both uteri

Pups Right

CC ID: 327261
Seq. Order: 33
Data Storage Type: NUMBER
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

number of embryos in right uterus

Pups Left

CC ID: 327262
Seq. Order: 34
Data Storage Type: NUMBER
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

number of embryos in left uterus

Samples Taken

CC ID: 327263
Seq. Order: 35
Data Storage Type: CHAR
Max Length: 45
Required: No
Primary Key: No
Status: Active
Description:

May include, vertebrae, second dorsal spine, fin clip, stomach, entire reproductive system, skin/denticle sample, liver, muscle tissue

Comments

CC ID: 327264
Seq. Order: 36
Data Storage Type: CHAR
Max Length: 100
Required: No
Primary Key: No
Status: Active
Description:

any additional observations.

Station/Source

CC ID: 327265
Seq. Order: 37
Data Storage Type: NUMBER
Max Length: 19
Required: No
Primary Key: No
Status: Active
Description:

links to mature female

# pups

CC ID: 327266
Seq. Order: 38
Data Storage Type: NUMBER
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

total number of embryos for that female

Pups rt

CC ID: 327267
Seq. Order: 39
Data Storage Type: NUMBER
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

number of embryos right uterus

Wt g

CC ID: 327268
Seq. Order: 40
Data Storage Type: NUMBER
Max Length: 5
Required: No
Primary Key: No
Status: Active
Description:

grams

Pups L

CC ID: 327269
Seq. Order: 41
Data Storage Type: NUMBER
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

total number of pups in left uterus

COL

CC ID: 327270
Seq. Order: 42
Data Storage Type: NUMBER
Max Length: 4
Required: No
Primary Key: No
Status: Active
Description:

clasper outside length mm

CIL

CC ID: 327271
Seq. Order: 43
Data Storage Type: NUMBER
Max Length: 4
Required: No
Primary Key: No
Status: Active
Description:

clasper inside length mm

Calcified?

CC ID: 327272
Seq. Order: 44
Data Storage Type: CHAR
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

are claspers fully calcified, yes or no

Rotate ?

CC ID: 327273
Seq. Order: 45
Data Storage Type: CHAR
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

do claspers rotate 180 degrees, yes or no

Rhip Opens?

CC ID: 327274
Seq. Order: 46
Data Storage Type: CHAR
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

does rhipidion open fully, yes or no

Siphon Sacs?

CC ID: 327275
Seq. Order: 47
Data Storage Type: CHAR
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

do siphon sacs inflate fully, yes or no

Rt testis L

CC ID: 327276
Seq. Order: 48
Data Storage Type: NUMBER
Max Length: 5
Required: No
Primary Key: No
Status: Active
Description:

length of right testis, mm

RT testis W

CC ID: 327277
Seq. Order: 49
Data Storage Type: NUMBER
Max Length: 5
Required: No
Primary Key: No
Status: Active
Description:

width of right testis, mm

Epidid Width

CC ID: 327278
Seq. Order: 50
Data Storage Type: NUMBER
Max Length: 3
Required: No
Primary Key: No
Status: Active
Description:

width of right epididymis, mm

R testis Wt

CC ID: 327279
Seq. Order: 51
Data Storage Type: NUMBER
Max Length: 5
Required: No
Primary Key: No
Status: Active
Description:

weight of right testis, grams

Sperm?

CC ID: 327280
Seq. Order: 52
Data Storage Type: CHAR
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

seminal fluid present, yes or no

Support Roles

Data Steward

CC ID: 770090
Date Effective From: 2005
Date Effective To:
Contact (Person): Jones, Lisa M
Address: 3209 Frederic St.
Pascagoula, MS 39568
Email Address: lisa.m.jones@noaa.gov
Phone: 228-549-1610
Fax: 228-769-9200

Distributor

CC ID: 770091
Date Effective From: 2016
Date Effective To:
Contact (Organization): National Centers for Environmental Information - Silver Spring, Maryland (NCEI-MD)
Address: NOAA/NESDIS E/OC SSMC3, 4th Floor, 1351 East-West Highway
Silver Spring, MD 20910-3282
Phone: (301) 713-3277

Metadata Contact

CC ID: 770092
Date Effective From: 2005
Date Effective To:
Contact (Person): Jones, Lisa M
Address: 3209 Frederic St.
Pascagoula, MS 39568
Email Address: lisa.m.jones@noaa.gov
Phone: 228-549-1610
Fax: 228-769-9200

Point of Contact

CC ID: 770093
Date Effective From: 2013
Date Effective To:
Contact (Person): Weber, Charles J
Address: 3209 Frederic Street
Pascagoula, MS 39567-4112
Phone: 228-549-1684
Fax: 228-769-9200
Business Hours: Retired IT United Head Pascagoula

Extents

Currentness Reference: Ground Condition

Extent Group 1

Extent Group 1 / Geographic Area 1

CC ID: 770095
W° Bound: -98
E° Bound: -81
N° Bound: 31
S° Bound: 24
Description

Gulf of Mexico

Extent Group 1 / Time Frame 1

CC ID: 770096
Time Frame Type: Range
Start: 2005
End: 2012

Distribution Information

Distribution 1

CC ID: 326849
Start Date: 2016
End Date: Present
Download URL: https://www.nodc.noaa.gov/archive/arc0091/0150633/1.1/data/0-data/Squalus%20cubensis%281%29.xlsx
Distributor: National Centers for Environmental Information - Silver Spring, Maryland (NCEI-MD) (2016 - Present)
File Name: Squalus cubensis(1).xlsx
Description:

Actual .xlsx file on the NCEI archive
File Type (Deprecated): XLS, Microsoft Excel worksheet
Distribution Format: XLS - Microsoft Excel
Compression: Uncompressed
Review Status: Chked Viruses Inapp Content

Catalog Details

Catalog Item ID: 31634
GUID: gov.noaa.nmfs.inport:31634
Metadata Record Created By: David Huddleston
Metadata Record Created: 2016-03-22 13:12+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2023-10-17 16:12+0000
Metadata Record Published: 2022-05-05
Owner Org: SEFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2022-05-05
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2023-05-05