AFSC/RACE/SAP/Pathobiology: 2016 Bitter crab disease prevalence in Chionoecetes spp. from eastern Bering Sea upper continental slope
Data Set (DS) | Alaska Fisheries Science Center (AFSC)GUID: gov.noaa.nmfs.inport:36062 | Updated: March 26, 2025 | Published / External
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Summary
Short Citation
Alaska Fisheries Science Center, 2025: AFSC/RACE/SAP/Pathobiology: 2016 Bitter crab disease prevalence in Chionoecetes spp. from eastern Bering Sea upper continental slope, https://www.fisheries.noaa.gov/inport/item/36062.
Full Citation Examples
This dataset contains crab data from a field survey of Chionoecetes spp. collected during the 2016 NOAA/NMFS/AFSC/RACE groundfish and invertebrate resources bottom trawl survey of the eastern Bering Sea continental slope (EBSS). Crabs were taken opportunistically, at any station regardless of location and depth, and at random. Blood samples were taken from collected crab using non-lethal methods and were preserved in 100% ethanol. Samples were tested in a laboratory with a DNA test to detect the presence of the parasite Hematodinium sp., the causative agent of Bitter Crab Syndrome (BCS). The data includes sampling year, sampling station information, species, crab morphometrics, Hematodinium sp. parasite presence/absence based on PCR assay results.
Distribution Information
-
Note: Dataset migrated by Dan Woodrich (AFSC data management coordinator) on 12/15/2021. Contact: Daniel.woodrich@noaa.gov
There are no legal restrictions on access to the data. They reside in public domain and can be freely distributed.
User must read and fully comprehend the metadata prior to use. Applications or inferences derived from the data should be carefully considered for accuracy. Acknowledgement
of NOAA/NMFS/AFSC, as the source from which these data were obtained in any publications and/or other representations of these, data is suggested.
Controlled Theme Keywords
biota, oceans
Child Items
| Type | Title |
|---|---|
| Entity | 2016 Slope Collection Data |
Contact Information
Point of Contact
Pam Jensen
pam.jensen@noaa.gov
Metadata Contact
Metadata Coordinators MC
afsc.metadata@noaa.gov
Extents
-179.483° W,
-165.398° E,
60.595° N,
54.266° S
Eastern Bering Sea, Alaska
2016
Item Identification
| Title: | AFSC/RACE/SAP/Pathobiology: 2016 Bitter crab disease prevalence in Chionoecetes spp. from eastern Bering Sea upper continental slope |
|---|---|
| Short Name: | AFSC/RACE/SAP/Pathobiology: 2016 Bitter crab disease prevalence in Chionoecetes spp. from eastern Bering Sea upper continental slope |
| Status: | In Work |
| Abstract: |
This dataset contains crab data from a field survey of Chionoecetes spp. collected during the 2016 NOAA/NMFS/AFSC/RACE groundfish and invertebrate resources bottom trawl survey of the eastern Bering Sea continental slope (EBSS). Crabs were taken opportunistically, at any station regardless of location and depth, and at random. Blood samples were taken from collected crab using non-lethal methods and were preserved in 100% ethanol. Samples were tested in a laboratory with a DNA test to detect the presence of the parasite Hematodinium sp., the causative agent of Bitter Crab Syndrome (BCS). The data includes sampling year, sampling station information, species, crab morphometrics, Hematodinium sp. parasite presence/absence based on PCR assay results. |
| Purpose: |
To track the presense of Hematodinium within Chionoecetes spp. in the eastern Bering Sea upper continental slope. |
| Notes: |
Loaded by FGDC Metadata Uploader, batch 9611, 12-20-2016 13:28 The following FGDC sections are not currently supported in InPort, but were preserved and will be included in the FGDC export: - Taxonomy (FGDC:taxonomy) |
Keywords
Theme Keywords
| Thesaurus | Keyword |
|---|---|
| ISO 19115 Topic Category |
biota
|
| ISO 19115 Topic Category |
oceans
|
| UNCONTROLLED | |
| None | bottom trawl |
| None | disease |
Temporal Keywords
| Thesaurus | Keyword |
|---|---|
| UNCONTROLLED | |
| None | summer |
Spatial Keywords
| Thesaurus | Keyword |
|---|---|
| UNCONTROLLED | |
| None | Alaska |
| None | Bering Sea |
Physical Location
| Organization: | Alaska Fisheries Science Center |
|---|---|
| City: | Seattle |
| State/Province: | WA |
| Country: | USA |
Data Set Information
| Data Set Scope Code: | Data Set |
|---|---|
| Data Set Type: | MS Excel |
| Maintenance Frequency: | As Needed |
| Data Presentation Form: | Table (digital) |
| Distribution Liability: |
The user is responsible for the results of any application of this data for other than its intended purpose. NOAA denies liability if the data are misused. |
Support Roles
Data Steward
| Date Effective From: | 2016 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Jensen, Pam |
| Email Address: | pam.jensen@noaa.gov |
Distributor
| Date Effective From: | 2016-12-20 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Foy, Robert |
| Email Address: | robert.foy@noaa.gov |
Metadata Contact
| Date Effective From: | 2016-12-20 |
|---|---|
| Date Effective To: | |
| Contact (Position): | Metadata Coordinators MC |
| Email Address: | afsc.metadata@noaa.gov |
Originator
| Date Effective From: | 2016-12-20 |
|---|---|
| Date Effective To: | |
| Contact (Organization): | Alaska Fisheries Science Center (AFSC) |
| Address: |
7600 Sand Point Way N.E., Building 4 Seattle, WA 98115 USA |
| Email Address: | afsc.webmaster@noaa.gov |
| Phone: | (206) 526-4000 |
| Fax: | (206) 526-4004 |
| URL: | https://www.fisheries.noaa.gov/about/alaska-fisheries-science-center |
| Business Hours: | 0700-1700 Pacific Time |
Point of Contact
| Date Effective From: | 2016-12-20 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Jensen, Pam |
| Email Address: | pam.jensen@noaa.gov |
Extents
| Currentness Reference: | Ground Condition |
|---|
Extent Group 1
Extent Group 1 / Geographic Area 1
| W° Bound: | -179.483 | |
|---|---|---|
| E° Bound: | -165.398 | |
| N° Bound: | 60.595 | |
| S° Bound: | 54.266 | |
| Description |
Eastern Bering Sea, Alaska |
|
Extent Group 1 / Time Frame 1
| Time Frame Type: | Discrete |
|---|---|
| Start: | 2016 |
Access Information
| Security Class: | Unclassified |
|---|---|
| Security Classification System: |
unclassified |
| Data Access Procedure: |
unknown |
| Data Access Constraints: |
There are no legal restrictions on access to the data. They reside in public domain and can be freely distributed. |
| Data Use Constraints: |
User must read and fully comprehend the metadata prior to use. Applications or inferences derived from the data should be carefully considered for accuracy. Acknowledgement of NOAA/NMFS/AFSC, as the source from which these data were obtained in any publications and/or other representations of these, data is suggested. |
Distribution Information
Distribution 1
| Download URL: | https://console.cloud.google.com/storage/browser/_details/nmfs_odp_afsc/RACE/SAP/Pathobiology%3B%202016%20Bitter%20crab%20disease%20prevalence%20in%20Chionoecetes%20spp.%20from%20eastern%20Bering%20Sea%20upper%20continental%20slope.csv |
|---|---|
| Distributor: | |
| Description: |
Note: Dataset migrated by Dan Woodrich (AFSC data management coordinator) on 12/15/2021. Contact: Daniel.woodrich@noaa.gov |
Technical Environment
| Description: |
Excel |
|---|
Data Quality
| Accuracy: |
Data is submitted through a thorough QA/QC process. |
|---|---|
| Completeness Measure: |
not applicable |
| Completeness Report: |
Data set includes data collected from standard and non-standard hauls. |
| Conceptual Consistency: |
Data is checked for values outside range. |
| Quality Control Procedures Employed: |
Data is submitted through a thorough QA/QC process. |
Data Management
| Have Resources for Management of these Data Been Identified?: | No |
|---|---|
| Approximate Percentage of Budget for these Data Devoted to Data Management: | Unknown |
| Do these Data Comply with the Data Access Directive?: | No |
| Is Access to the Data Limited Based on an Approved Waiver?: | No |
| If Distributor (Data Hosting Service) is Needed, Please Indicate: | Yes |
| Approximate Delay Between Data Collection and Dissemination: | unknown |
| If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed: |
no delay |
| Actual or Planned Long-Term Data Archive Location: | NCEI-MD |
| Approximate Delay Between Data Collection and Archiving: | unknown |
| How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?: |
IT Security and Contingency Plan for the system establishes procedures and applies to the functions, operations, and resources necessary to recover and restore data as hosted in the Western Regional Support Center in Seattle, Washington, following a disruption. |
Lineage
Process Steps
Process Step 1
| Description: |
This dataset contains randomly chosen samples of crab collected from the 2016 NOAA/NMFS/AFSC/RACE groundfish and invertebrate resources bottom trawl survey of the eastern Bering Sea continental slope (EBSS). The survey area extended from Unalaska and Akutan Island to the U.S.-Russian maritime boundary and was divided into six geographic subareas. Each tow is one-half hour in duration with a standard speed of 2.5 knots - exact tow duration and distance fished for each haul can be found in RACEBASE.HAUL. |
|---|
Process Step 2
| Description: |
The sex of the crab is identified (1 = Male, 2 = Female). Individual crab carapaces were measured (± 1 mm), excluding spines, and are reported as size. Shell condition class serves as a semi-quantitative index of molt status and time in shell post-molt. Carapace shell condition was assigned to one of six classes according to specific criteria (0 = premolt or molting, 2 = new hardshell both firm and clean, 3 = oldshell slightly worn, 4 = oldshell worn, 5 = very oldshell). Chela height is measured on right chela at greatest distance (± 0.1 mm) excluding spines. Null or blank fields in data represent no chela height information reported for crab specimen. |
|---|
Process Step 3
| Description: |
Female crab abdomens were evaluated to determine reproductive condition based on the color of the eggs (0 = no eggs, 4 = orange, 9 = no egg color information reported or does not apply), the condition of the eggs (0 = no eggs, 1 = uneyed, 9 = no egg condition information reported or does not apply), and the size of the egg clutch (0 = immature, 1 = mature female no eggs, 2 = trace to 1/8, 3 = 1/4, 4 = 1/2, 5 = 3/4, 6 = full, 9 = no egg clutch information reported or does not apply). |
|---|
Process Step 4
| Description: |
DNA was extracted using modified Ivanova et al. (2006) protocol. Extracted DNA was assayed with two primer sets, targeting either 18S or ITS1 rDNA, to determine presence or absence of Hematodinium spp. Refer to metadata Point of Contact for PCR conditions. PCR Result is identified (0 = negative for Hematodinium DNA, 1 = positive for Hematodinium DNA, 3 = undetermined, at the limit of detection). |
|---|
Child Items
Rubric scores updated every 15m
|
Type | Title |
|---|---|---|
| Entity | 2016 Slope Collection Data |
Catalog Details
| Catalog Item ID: | 36062 |
|---|---|
| GUID: | gov.noaa.nmfs.inport:36062 |
| Metadata Record Created By: | Christie Lang |
| Metadata Record Created: | 2016-12-20 13:28+0000 |
| Metadata Record Last Modified By: | SysAdmin InPortAdmin |
| Metadata Record Last Modified: | 2025-03-26 20:53+0000 |
| Metadata Record Published: | 2016-12-20 |
| Owner Org: | AFSC |
| Metadata Publication Status: | Published Externally |
| Do Not Publish?: | N |
| Metadata Last Review Date: | 2016-12-20 |
| Metadata Review Frequency: | 1 Year |
| Metadata Next Review Date: | 2017-12-20 |