National Status and Trends: Contaminant body burdens and histopathology of fish and shellfish from Alaska
Data Set (DS) | National Centers for Coastal Ocean Science (NCCOS)GUID: gov.noaa.nmfs.inport:38941 | Updated: October 17, 2023 | Published / External
Summary
Short Citation
National Centers for Coastal Ocean Science, 2024: National Status and Trends: Contaminant body burdens and histopathology of fish and shellfish from Alaska, https://www.fisheries.noaa.gov/inport/item/38941.
Full Citation Examples
In response to the growing concerns among Chugach communities, contaminant body burden and histopathological condition of chum and sockeye salmon (Oncorhynchus keta and Oncorhynchus nerka) and the shellfish cockles and softshell clams (Clinocardium nuttallii and Mya arenaria) were assessed. The fish and shellfish were collected from traditional subsistence harvest areas in the vicinity of Nanwalek, Port Graham and Seldovia, AK, and were analyzed for trace metals and residues of organic contaminants. Additionally, the fish and shellfish were histologically characterized for the presence, prevalence and severity of tissue pathology, disease, and parasite infections. Data served under this project include measurements of trace elements, polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls, DDTs, chlorinated hydrocarbons and histopathology parameters, which include an array of about 30 parasitic taxa (e.g. bucephalus, chlamydia, ciliates, cestodes and nematodes) and 11 diseases (e.g. tumors, neoplasm and necrosis). This project provides invaluable baseline data that is georeferenced and served on the internet through the NOAA's National Status and Trends data portal.
Distribution Information
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XML (Structured Text)
Downloadable Data
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Text (Unstructured)
Downloadable Data
None
NOAA requests that all individuals who download NOAA data acknowledge the source of these data in any reports, papers, or presentations. If you publish these data, please include a statement similar to: "Some or all of the data described in this article were produced by the NOAA's Ocean Service through its National Status and Trends Program (NSandT)"
Controlled Theme Keywords
biota, environment, health, oceans
Child Items
Type | Title |
---|---|
Entity | NPRB1019_Contaminant |
Entity | NPRB1019_Fish_Histopath2 |
Entity | NPRB1019_Shellfish_Histopath |
Contact Information
Point of Contact
NCCOS Scientific Data Coordinator
NCCOS.data@noaa.gov
Metadata Contact
NCCOS Scientific Data Coordinator
NCCOS.data@noaa.gov
Extents
-151.9611° W,
-151.6059° E,
59.487° N,
59.3386° S
Intertidal coastal areas off Port Graham, Nanwalek and Seldovia in Lower Cook Inlet
2010
Item Identification
Title: | National Status and Trends: Contaminant body burdens and histopathology of fish and shellfish from Alaska |
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Short Name: | NPRB_2010-19 |
Status: | Completed |
Publication Date: | 2011-06-15 |
Abstract: |
In response to the growing concerns among Chugach communities, contaminant body burden and histopathological condition of chum and sockeye salmon (Oncorhynchus keta and Oncorhynchus nerka) and the shellfish cockles and softshell clams (Clinocardium nuttallii and Mya arenaria) were assessed. The fish and shellfish were collected from traditional subsistence harvest areas in the vicinity of Nanwalek, Port Graham and Seldovia, AK, and were analyzed for trace metals and residues of organic contaminants. Additionally, the fish and shellfish were histologically characterized for the presence, prevalence and severity of tissue pathology, disease, and parasite infections. Data served under this project include measurements of trace elements, polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls, DDTs, chlorinated hydrocarbons and histopathology parameters, which include an array of about 30 parasitic taxa (e.g. bucephalus, chlamydia, ciliates, cestodes and nematodes) and 11 diseases (e.g. tumors, neoplasm and necrosis). This project provides invaluable baseline data that is georeferenced and served on the internet through the NOAA's National Status and Trends data portal. |
Purpose: |
Specific objectives of the study were to: the health risks associated with consumption of subsistence food items collected in the traditional harvest ground in the Chugach Native communities of south-central Alaska. To achieve this goal the following objectives were accomplished: 1) Characterize the potential contamination of sessile (shellfish) vs. mobile (salmon) components of the subsistence fishery, using body burdens and histopathology as metrics; 2) Assess any potential correlations between body burdens and histopathology data; 3) Evaluation of the health condition of the fish with analyses of tissue pathogens and occurrences of diseases. |
Notes: |
998 |
Other Citation Details: |
Apeti, D.A., S.I. Hartwell, W.E. Johnson and G.G. Lauenstein. 2012. National Status and Trends Bioeffects Progam: Field Methods. NOAA National Centers for Coastal Ocean Science, Center for Coastal Monitoring and Asssessment. NOAA NCCOS Technical Memorandum 135. Silver Spring, MD.27 pp. Apeti, D.A., W.E. Johnson, K.L. Kimbrough, and G.G. Lauenstein. 2012. National Status and Trends Mussel Watch Proram: Sampling Methods 2012 Update. NOAA Technical Memorandum 134. NOAA National Centers for Coastal Ocean Science, Center for Coastal Monitoring and Asssessment. Silver Spring, MD. 39 pp. Kim, Y., Ashton-Alcox, K.A. and Powell. E.N. 2006. Histological Techniques for Marine Bivalve Molluscs: Update. Silver Spring, MD. NOAA Technical Memorandum NOS NCCOS, 27. 76 pp. Meyers, T. R., and J. D. Hendricks. 1985. Histopathology. In G.M. Rand and S.R. Petrocelli (editors), Fundamentals of aquatic toxicology, p. 283-331. Hemisphere, Washington, DC. McDonald, S. J., D. S. Frank, J. A. Ramirez, B. Wang, and J. M. Brooks. 2006. Ancillary Methods of the National Status and Trends Program: Update 2000-2006, NOAA Technical Memorandum, NOS NCCOS 28. Lauenstein, G. G. and A. Y. Cantillo (1993) Sampling and analytical methods of the National Status and Trends Program National Benthic Surveillance and Mussel Watch Kimbrough K.L. and G.G. Lauenstein. 2006a. Organic Contaminant Analytical Methods of the National Status and Trends Program: 2000-2006. U.S. Dept. Comm. NOAA Technical Memorandum 30, NOS NCCOS, Silver Spring, MD. Kimbrough, K.L. and G.G. Lauenstein. 2006b. Trace Metal Analytical Methods of the National Status and Trends Program: 2000-2006. US Dept. Comm., NOAA Technical Memorandum 29, NOS NCCOS, Silver Spring, MD. Hartwell, S.I., A.D. Apeti,., L.W. Claflin, W.E. Johnson, and K.L. Kimbrough. 2009. Sediment Quality Triad Assessment in Kachemak Bay: Characterization of Soft Bottom Benthic Habitats and Contaminant Bioeffects Assessment. North Pacific Research Board Final Report 726, 138pp. |
Supplemental Information: |
PRINCIPAL INVESTIGATORS: Dennis Apeti, NOAA Ocean Service, National Status and Trends Program; S. Ian Hartwell, NOAA Ocean Service, National Status and Trends Program; Mark Myers, NOAA National Marine Fisheries Service, Northwest Fisheries Science Center; Jeff Hetrick, Chugach Regional Resource Commission, Alvtiiq Pride Shellfish Hatchery SAMPLE COLLECTION INVESTIGATORS: Dennis Apeti, NOAA Ocean Service, National Status and Trends Program; S. Ian Hartwell, NOAA Ocean Service, National Status and Trends Program; Mark Myers, NOAA National Marine Fisheries Service, Northwest Fisheries Science Center; Jeff Hetrick, Chugach Regional Resource Commission, Alvtiiq Pride Shellfish Hatchery SAMPLES PROCESSING INVESTIGATORS: -Fish necropsis: Dennis Apeti, NOAA Ocean Service, National Status and Trends Program, S. Ian Hartwell, NOAA Ocean Service, National Status and Trends Program; Mark Myers, NOAA National Marine Fisheries Service, Northwest Fisheries Science Center Necropsis was conducted at the NOAA/UAF Kasitsna laboratory. http://www.nurp.noaa.gov/Spotlight/KasitsnaBay.htm. -Contaminant analyses: Organic and inorganic chemicals in fish and shellfish tissues: TDI Brooks Inc., College Station, TX. http://ccma.nos.noaa.gov/about/coast/nsandt/download.aspx. -Histopatology characterization in fish: Mark Myers, NOAA National Marine Fisheries Service, Northwest Fisheries Science Center. http://www.nwfsc.noaa.gov/. -Histopathology characterization in shellfish: Rutgers University, Haskin Shellfish Research Laboratory. http://hsrl.rutgers.edu/ |
Keywords
Theme Keywords
Thesaurus | Keyword |
---|---|
ISO 19115 Topic Category |
biota
|
ISO 19115 Topic Category |
environment
|
ISO 19115 Topic Category |
health
|
ISO 19115 Topic Category |
oceans
|
UNCONTROLLED | |
NOS Data Explorer Topic Category | Environmental Monitoring |
None | analytes |
None | bivalve mollusk |
None | chemical |
None | coastal ecosystem |
None | coastal monitoring |
None | contaminants |
None | DDT |
None | estuary |
None | inorganic |
None | NCCOS Research Data Type > Field Observation |
None | NCCOS Research Priority > Long-term Monitoring |
None | NCCOS Research Priority > Stressors, Impacts, Mitigation, and Restoration (SIMR) |
None | NCCOS Research Topic > Bioeffects/Toxicity |
None | NCCOS Research Topic > Chemical Contaminants |
None | NCCOS Research Topic > Monitoring |
None | organic |
None | organochlorines |
None | PAH |
None | PCB |
None | pesticides |
None | polychlorinated biphenyls |
None | polynuclear aromatic hydrocarbons |
None | TBT |
None | total butyltins |
None | trace element |
Spatial Keywords
Thesaurus | Keyword |
---|---|
UNCONTROLLED | |
None | Alaska |
None | Kachemak Bay |
None | Lower Cook Inlet |
None | Nanwalek |
None | NCCOS Research Location > Geographic Area > Coastal Ocean |
None | NCCOS Research Location > Region > Alaska |
None | NCCOS Research Location > U.S. States and Territories > Alaska |
None | Port Graham |
None | Seldovia |
None | Southcentral Alaska |
Physical Location
Organization: | National Centers for Coastal Ocean Science |
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City: | Silver Spring |
State/Province: | MD |
Data Set Information
Data Set Scope Code: | Data Set |
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Maintenance Frequency: | None Planned |
Data Presentation Form: | Table (digital) |
Entity Attribute Overview: |
The data dictionary may be found at: http://ccma.nos.noaa.gov/about/coast/nsandt/dictionaries/ba_mw_chemistry_dictionary.aspx |
Entity Attribute Detail Citation: |
National Status and Trends Program - reference data dictionary http://ccma.nos.noaa.gov/about/coast/nsandt/dictionaries/ba_mw_chemistry_dictionary.aspx |
Distribution Liability: |
These data were prepared by an agency of the United States Government. Neither the United States Government nor any agency thereof, nor any of their employees, make any warranty, expressed or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed in this report, or represents that its use would not infringe privately owned rights. Reference therein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof. Any views and opinions of authors expressed herein do not necessarily state or reflect those of the United States Government or any agency thereof. Although all data have been used by NOAA, no warranty, expressed or implied, is made by NOAA as to the accuracy of the data and/or related materials. The act of distribution shall not constitute any such warranty, and no responsibility is assumed by NOAA in the use of these data or related materials. |
Data Set Credit: | The partners in the Resurrection Bay Interspecies Study were: (1) National Oceanographic and Atmospheric Administration (NOAA); (2) Chugach Regional Resource Commission(CRRC), (3) Alutiiq Pride Shellfish Hatchery. |
Support Roles
Data Steward
Date Effective From: | 2011-06-15 |
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Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Distributor
Date Effective From: | 2011-06-15 |
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Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Metadata Contact
Date Effective From: | 2011-06-15 |
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Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Point of Contact
Date Effective From: | 2011-06-15 |
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Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Principal Investigator
Date Effective From: | 2011-06-15 |
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Date Effective To: | |
Contact (Person): | Piniak, Greg |
Email Address: | greg.piniak@noaa.gov |
Extents
Currentness Reference: | Ground Condition |
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Extent Group 1
Extent Group 1 / Geographic Area 1
W° Bound: | -151.9611 | |
---|---|---|
E° Bound: | -151.6059 | |
N° Bound: | 59.487 | |
S° Bound: | 59.3386 | |
Description |
Intertidal coastal areas off Port Graham, Nanwalek and Seldovia in Lower Cook Inlet |
Extent Group 1 / Time Frame 1
Time Frame Type: | Discrete |
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Start: | 2010 |
Access Information
Security Class: | Unclassified |
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Data Access Constraints: |
None |
Data Use Constraints: |
NOAA requests that all individuals who download NOAA data acknowledge the source of these data in any reports, papers, or presentations. If you publish these data, please include a statement similar to: "Some or all of the data described in this article were produced by the NOAA's Ocean Service through its National Status and Trends Program (NSandT)" |
Distribution Information
Distribution 1
Download URL: | https://products.coastalscience.noaa.gov/collections/ltmonitoring/nsandt/default.aspx |
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Distributor: | |
Description: |
Downloadable Data |
File Type (Deprecated): | xml |
Distribution Format: | XML (Structured Text) |
Distribution 2
Download URL: | https://products.coastalscience.noaa.gov/collections/ltmonitoring/nsandt/default.aspx |
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Distributor: | |
Description: |
Downloadable Data |
File Type (Deprecated): | txt |
Distribution Format: | Text (Unstructured) |
URLs
URL 1
URL: | https://coastalscience.noaa.gov/projects/detail?key=232 |
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URL Type: |
Online Resource
|
URL 2
URL: | https://products.coastalscience.noaa.gov/collections/ltmonitoring/nsandt/default.aspx |
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URL Type: |
Online Resource
|
URL 3
URL: | http://www2.coastalscience.noaa.gov/publications/ccma/detail.aspx?resource=kXUVxxA8LH64JetFFum2pA6CRM0NB9yNGhLpzqLyij4= |
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URL Type: |
Online Resource
|
Activity Log
Activity Log 1
Activity Date/Time: | 2016-11-16 |
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Description: |
Date that the source FGDC record was last modified. |
Activity Log 2
Activity Date/Time: | 2017-04-05 |
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Description: |
Converted from Content Standard for Digital Geospatial Metadata (version FGDC-STD-001-1998) using 'fgdc_to_inport_xml.pl' script. Contact Tyler Christensen (NOS) for details. |
Activity Log 3
Activity Date/Time: | 2017-11-01 |
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Description: |
Replaced entire Lineage section to populate new Source Contribution field. |
Data Quality
Accuracy: |
MEASUREMENT QUALITY OBJECTIVES: Sample collection followed established protocols for the National Status and Trends Program. The measurement quality objectives of NSandT specify accuracy and precision requirements of 30% for organic analytes and 15% for inorganic analytes in tissue samples. QA procedures include running blanks, spiked samples, and standard reference materials with each batch of samples. Any batch failing to meet the specifications is reanalyzed or rejected. The QA Criteria may be found in NOAAs Tech Memo NOS NCCOS 30 and 29. The standard NSandT analytical protocols are described in Kimbrough et al. (2006a and 2006b). The histological analyses of shellfish were performed at Rutgers University's Haskin Shellfish Laboratory. A detailed account of the protocol is described in the NOAA's NOS/NCCOS technical memorandum number 27 (Kim et al. 2006). From each site 5 individual organisms of legal harvestable size (38 mm) were randomly selected and prepared for the analysis. The animal was placed in Davidson's fixative for 1 week and then transferred to 70% alcohol for storage. For all bivalves, the fixed tissue samples were embedded in paraffin after dehydration and clearing. The tissue-paraffin block was then placed in a freezer overnight before sectioning. The paraffin-embedded tissue blocks were first sliced at 20 micrometers to expose an entire tissue cross-section, and then sectioned at 5 micrometers. Tissue sections were deparaffinized and hydrated using a xylene-ethanol series. Following hydration, slides were stained in a pentachrome series, dehydrated in a series of acetic acid dips followed by acetone, cleared in xylene and mounted in Permount. Each slide was examined microscopically. Shellfish histopathology characterization consisted of quantifying infection intensity of parasites, the occurrence and extent of tissue pathologies, and the intensity of diseases all of which were determined using quantitative or semi-quantitative measures. Fish histopathology analysis of salmon was performed at the NOAA's Environmental Conservation of the Northwest Fisheries Science Center, NOAA Fisheries, in Seattle, Washington. Histopathologic diagnosis on fish liver, head and trunk kidney, and gill tissues. Sections of liver, head and trunk kidney (1cm in thickness) and two gill arches collected from individual salmon will be preserved in Davidson's fixative. Lesions and parasites in tissue sections were identified and classified according to the criteria specified in comparative pathology (Meyers and Hendricks, 1985; Cotran et al., 1999) |
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Completeness Report: |
Data are believed to be complete |
Conceptual Consistency: |
Sample collection followed established protocols for the National Status and Trends Program. The analytical instruments were calibrated by standard laboratory procedures. In total, approximately 5% of all analyses were QC analyses. Processing quality was considered acceptable if the following criteria were met: blanks were less than three times the minimum detection limit; accuracy, as determined by analysis of reference materials, was within 30% for organic analytes and within 20% for inorganic analytes; and precision, as determined by replicate analyses, was within 30% for organic analytes and within 20% for inorganic analytes. Additional specifications and guidelines are presented in Valente and Strobel (1993). Contact the project manager for additional information on the Quality Assurance Project Plan |
Lineage
Sources
Histological Techniques for Marine Bivalve Molluscs: Update
Contact Name: | Kim, Y., Ashton-Alcox, K.A., Powell. E.N. |
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Publish Date: | 2006-01-01 |
Extent Type: | Discrete |
Extent Start Date/Time: | 2006 |
Source Contribution: |
Reference for histopathology chracterization standard operation procedure in shellfish | Source Geospatial Form: document | Type of Source Media: paper |
Histopathology
Contact Name: | Meyers, T. R. and Hendricks, J. D. |
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Publish Date: | 1985-01-01 |
Extent Type: | Discrete |
Extent Start Date/Time: | 1985 |
Source Contribution: |
Reference for histopathology chracterization standard operation procedure in fish | Source Geospatial Form: document | Type of Source Media: paper |
Major and Trace Element Analytical Methods of the National Status and Trends Program: 2000-2006
Contact Name: | Kimbrough, K.L. and Lauenstein, G.G. |
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Publish Date: | 2006-01-01 |
Extent Type: | Range |
Extent Start Date/Time: | 2000 |
Extent End Date/Time: | 2006 |
Citation URL: | http://ccma.nos.noaa.gov/publications/nsandtmethods.pdf |
Source Contribution: |
Reference for standard operation procedure for organic contaminant analysis | Source Geospatial Form: document | Type of Source Media: online |
National Status and Trends Bioeffects Program: Field Methods. NOAA National Centers for Coastal Ocean Science, Center for Coastal Monitoring and Assessment
Contact Name: | Apeti, D.A., Hartwell, S.I., Johnson, W.E., Lauenstein, G.G. |
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Publish Date: | 2012-01-01 |
Source Contribution: |
Reference for standard operation procedure for sample collection | Source Geospatial Form: document | Type of Source Media: paper |
Organic Contaminant Analytical Methods of the National Status and Trends Program: 2000-2006
Contact Name: | Kimbrough K.L. and Lauenstein, G.G. |
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Publish Date: | 2006-01-01 |
Extent Type: | Range |
Extent Start Date/Time: | 2000 |
Extent End Date/Time: | 2006 |
Citation URL: | http://ccma.nos.noaa.gov/publications/organicsmethods.pdf |
Source Contribution: |
Reference for standard operation procedure for inorganic contaminants (heavy metals)analysis | Source Geospatial Form: document | Type of Source Media: online |
Sampling and Analytical Methods of the National Status and Trends Program Mussel Watch Project: 1993-1996 Update
Contact Name: | Lauenstein, G.G., and Cantillo, A.Y. |
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Publish Date: | 1998-01-01 |
Extent Type: | Range |
Extent Start Date/Time: | 1993 |
Extent End Date/Time: | 1996 |
Citation URL: | http://ccma.nos.noaa.gov/publications/tm130.pdf |
Source Contribution: |
Reference for sampling standard operation procedure | Source Geospatial Form: document | Type of Source Media: paper |
Sampling and Analytical Methods of the National Status and Trends Program Mussel Watch Project: 1993-1996 Update
Contact Name: | Lauenstein, G.G., and Cantillo, A.Y. |
---|---|
Publish Date: | 1998-01-01 |
Extent Type: | Range |
Extent Start Date/Time: | 1985 |
Extent End Date/Time: | 2012 |
Source Contribution: |
Sampling and analytical methods used in this project followed the National Status and Trends standard field and analytical methods | Source Geospatial Form: document | Type of Source Media: paper |
Process Steps
Process Step 1
Description: |
Data Acquisition: The sample collection followed the standard Mussel Watch protocols. Sampling Objective: Fish (chum and sockeye salmon) and shellfish (softshell clams and cockles) were collected for the analysis of environmental contaminants and disease. Sampling Methods Summary: Sampling followed quality controlled and quality assured procedures of the NSandT and national Marine Fisheries Service (NMFS) for sample collection (Apeti et al., 2012; Cantillo and Lauenstein 1998; Meyers and Hendricks, 1985). The salmon and shellfish were collected at the traditional harvest grounds of Nanwalek, Port Graham and Seldovia. For clams and cockles, composites of 30 and 10 individual organisms were collected for the contamination and disease analyses respectively. For the salmon, the intent was to do inter-species comparison, but also investigated any gender differences. Thus, at each location, 10 (5 females and 5 males) specimen of each species were collected. Mollusks were not shucked in the field; cleaned samples were then packed on ice and shipped to the laboratory. Composite samples were prepared by homogenizing the soft parts. Fish necropsy occurred as soon after death of the salmon as possible. The fish were sorted by species and measured to assert proper age range. To prevent cross contamination during necropsy, four sets of dissection tools were used, each for the removal of fish muscle, liver, kidney and gill |
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Process Date/Time: | 2010-01-01 00:00:00 |
Child Items
Rubric scores updated every 15m
Type | Title | |
---|---|---|
Entity | NPRB1019_Contaminant | |
Entity | NPRB1019_Fish_Histopath2 | |
Entity | NPRB1019_Shellfish_Histopath |
Catalog Details
Catalog Item ID: | 38941 |
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GUID: | gov.noaa.nmfs.inport:38941 |
Metadata Record Created By: | Tyler Christensen |
Metadata Record Created: | 2017-04-05 12:49+0000 |
Metadata Record Last Modified By: | SysAdmin InPortAdmin |
Metadata Record Last Modified: | 2023-10-17 16:12+0000 |
Metadata Record Published: | 2017-11-09 |
Owner Org: | NCCOS |
Metadata Publication Status: | Published Externally |
Do Not Publish?: | N |
Metadata Last Review Date: | 2017-11-09 |
Metadata Review Frequency: | 1 Year |
Metadata Next Review Date: | 2018-11-09 |