National Status and Trends, Benthic Surveillance Project DNA-Xenobiotic Adducts Data, 1991, National Centers for Coastal Ocean Science
Data Set (DS) | National Centers for Coastal Ocean Science (NCCOS)GUID: gov.noaa.nmfs.inport:39258 | Updated: October 17, 2023 | Published / External
Summary
Short Citation
National Centers for Coastal Ocean Science, 2024: National Status and Trends, Benthic Surveillance Project DNA-Xenobiotic Adducts Data, 1991, National Centers for Coastal Ocean Science, https://www.fisheries.noaa.gov/inport/item/39258.
Full Citation Examples
In order to determine the current status of and to detect any long-term trends in the environmental quality of U.S. nearshore waters, NOAA initiated the National Status and Trends program in 1984 with its National Benthic Surveillance Project. The primary objective of the Benthic Surveillance Project was to quantify concentrations of a suite of organic and inorganic contaminants in the livers of fish and surficial sediments from selected sites in the coastal and estuarine waters of the United States. In addition, the levels of certain indicators of the biological effects of these contaminants were measured. Incidences of visible lesions, including fin erosion, have been noted and histopathological examinations of various tissues have been carried out. Originally histopathological examinations determined the prevalence of any identifiable disease conditions in samples of liver, kidney, and gill tissue.In addition, the Benthic Surveillance Project tested fish livers from 30 locations in 1991 to identify the concentrations of DNA xenobiotic adducts. DNA xenobiotic adducts are a bioindicator of exposure to genotoxic compounds. Measurement of biological markers such as DNA xenobiotic adducts have been used to improve the evaluation of contaminant exposure and responses in indigenous fish, and thus reinforce the connection between exposure to toxic chemicals and the observed injuries.
Distribution Information
-
XML (Structured Text)
Live Data and Maps
-
Text (Unstructured)
Live Data and Maps
None
NOAA requests that all individuals who download NSandT data acknowledge the source of these data in any reports, papers, or presentations. If you publish these data, please include a statement similar to: "Some or all of the data described in this article were produced by NOAA through its National Status and Trends Program".
Controlled Theme Keywords
environment
Child Items
Type | Title |
---|---|
Entity | Dataset Parameters for Benthic Surveillance DNA Xenobiotic Adducts data |
Contact Information
Point of Contact
NCCOS Scientific Data Coordinator
NCCOS.data@noaa.gov
Metadata Contact
NCCOS Scientific Data Coordinator
NCCOS.data@noaa.gov
Extents
-166.5° W,
-67.3° E,
70.5° N,
25.6° S
1991
Item Identification
Title: | National Status and Trends, Benthic Surveillance Project DNA-Xenobiotic Adducts Data, 1991, National Centers for Coastal Ocean Science |
---|---|
Short Name: | bsdna_h |
Status: | Completed |
Publication Date: | 1992 |
Abstract: |
In order to determine the current status of and to detect any long-term trends in the environmental quality of U.S. nearshore waters, NOAA initiated the National Status and Trends program in 1984 with its National Benthic Surveillance Project. The primary objective of the Benthic Surveillance Project was to quantify concentrations of a suite of organic and inorganic contaminants in the livers of fish and surficial sediments from selected sites in the coastal and estuarine waters of the United States. In addition, the levels of certain indicators of the biological effects of these contaminants were measured. Incidences of visible lesions, including fin erosion, have been noted and histopathological examinations of various tissues have been carried out. Originally histopathological examinations determined the prevalence of any identifiable disease conditions in samples of liver, kidney, and gill tissue.In addition, the Benthic Surveillance Project tested fish livers from 30 locations in 1991 to identify the concentrations of DNA xenobiotic adducts. DNA xenobiotic adducts are a bioindicator of exposure to genotoxic compounds. Measurement of biological markers such as DNA xenobiotic adducts have been used to improve the evaluation of contaminant exposure and responses in indigenous fish, and thus reinforce the connection between exposure to toxic chemicals and the observed injuries. |
Purpose: |
In response to concerns over environmental quality of the Nation's coastal and estuarine ecosystems, NOAA created the National Status and Trends (NSandT) Program in 1984. From 1984 through 1993, the Benthic Surveillance Project monitored chemical concentrations in the livers (and for metabolites of PAH's in the bile) of bottom-dwelling fish and in sediments at the sites of fish capture. The Benthic Surveillance Project also measured the biological effects of contaminant exposure, primarily as prevalence's of toxicopathic liver diseases. |
Notes: |
982 |
Keywords
Theme Keywords
Thesaurus | Keyword |
---|---|
ISO 19115 Topic Category |
environment
|
UNCONTROLLED | |
None | Coastal Monitoring |
None | deoxyribonucleic acid |
None | DNA |
None | DNA abnormalities |
None | DNA adducts |
None | DNA xenobiotic adducts |
None | genotoxic exposure |
None | NCCOS Research Data Type > Field Observation |
None | NCCOS Research Priority > Long-term Monitoring |
None | NCCOS Research Priority > Stressors, Impacts, Mitigation, and Restoration (SIMR) |
None | NCCOS Research Topic > Bioeffects/Toxicity |
None | NCCOS Research Topic > Chemical Contaminants |
None | NCCOS Research Topic > Monitoring |
None | NSandT |
None | oceans |
None | xenobiotic deoxyribonucleic acid adducts |
Spatial Keywords
Thesaurus | Keyword |
---|---|
UNCONTROLLED | |
None | Baltimore Harbor, Brewerton Channel |
None | Boston Harbor, Deer Island |
None | Cape Elizabeth, Richmond Island |
None | Cape Fear River, Horseshoe Shaol |
None | Charlotte Harbor, Cape Haze |
None | Chesapeake Bay, Chester River |
None | Chesapeake Bay, James River |
None | Chesapeake Bay, Patuxent River |
None | Choctawhatchee Bay, Choctawhatchee Bay |
None | Dana Point Harbor, Outside |
None | Delaware Bay, Cherry Island Range |
None | Johns Bay, Pemaquid Neck |
None | Lower Laguna Madre, Laguna Heights |
None | Lower Laguna Madre, Long Island |
None | NCCOS Research Location > Geographic Area > Coastal Ocean |
None | NCCOS Research Location > Region > Alaska |
None | NCCOS Research Location > Region > East Coast |
None | NCCOS Research Location > Region > Gulf of Mexico |
None | NCCOS Research Location > Region > West Coast |
None | NCCOS Research Location > U.S. States and Territories > Alabama |
None | NCCOS Research Location > U.S. States and Territories > Alaska |
None | NCCOS Research Location > U.S. States and Territories > California |
None | NCCOS Research Location > U.S. States and Territories > Connecticut |
None | NCCOS Research Location > U.S. States and Territories > Delaware |
None | NCCOS Research Location > U.S. States and Territories > Florida |
None | NCCOS Research Location > U.S. States and Territories > Georgia |
None | NCCOS Research Location > U.S. States and Territories > Louisiana |
None | NCCOS Research Location > U.S. States and Territories > Maine |
None | NCCOS Research Location > U.S. States and Territories > Maryland |
None | NCCOS Research Location > U.S. States and Territories > Massachusetts |
None | NCCOS Research Location > U.S. States and Territories > Mississippi |
None | NCCOS Research Location > U.S. States and Territories > New Jersey |
None | NCCOS Research Location > U.S. States and Territories > New York |
None | NCCOS Research Location > U.S. States and Territories > North Carolina |
None | NCCOS Research Location > U.S. States and Territories > Oregon |
None | NCCOS Research Location > U.S. States and Territories > Rhode Island |
None | NCCOS Research Location > U.S. States and Territories > South Carolina |
None | NCCOS Research Location > U.S. States and Territories > Texas |
None | NCCOS Research Location > U.S. States and Territories > Virginia |
None | NCCOS Research Location > U.S. States and Territories > Washington |
None | New Bedford Harbor, Clarks Point |
None | Pascagoula River, Escatawpa River |
None | Pensacola Bay, Pensacola Bay |
None | Raritan Bay, East Reach |
None | Raritan Bay, Upper Bay |
None | Salem Harbor, Folger Point |
None | San Antonio Bay, Mosquito Point |
None | San Diego Bay, North |
None | San Diego Bay, Twenty Eighth Street |
None | San Francisco Bay, Hunters Point |
None | San Francisco Bay, Southampton Shoal |
None | San Pedro Bay, Outer Harbor |
None | Sapelo Sound, Dog Hammock |
None | St. Andrews Bay, Military Point |
None | St. Johns River, Arlington Channel |
None | St. Lucie River, Stuart |
None | U.S. Exclusive Economic Zone |
Physical Location
Organization: | National Centers for Coastal Ocean Science |
---|---|
City: | Silver Spring |
State/Province: | MD |
Data Set Information
Data Set Scope Code: | Data Set |
---|---|
Maintenance Frequency: | None Planned |
Data Presentation Form: | Table (digital) |
Distribution Liability: |
None |
Support Roles
Data Steward
Date Effective From: | 1992 |
---|---|
Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Distributor
Date Effective From: | 1992 |
---|---|
Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Metadata Contact
Date Effective From: | 1992 |
---|---|
Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Point of Contact
Date Effective From: | 1992 |
---|---|
Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Principal Investigator
Date Effective From: | 1992 |
---|---|
Date Effective To: | |
Contact (Person): | Piniak, Greg |
Email Address: | greg.piniak@noaa.gov |
Extents
Currentness Reference: | Publication Date |
---|
Extent Group 1
Extent Group 1 / Geographic Area 1
W° Bound: | -166.5 | |
---|---|---|
E° Bound: | -67.3 | |
N° Bound: | 70.5 | |
S° Bound: | 25.6 |
Extent Group 1 / Time Frame 1
Time Frame Type: | Discrete |
---|---|
Start: | 1991 |
Spatial Information
Spatial Representation
Representations Used
Vector: | Yes |
---|
Access Information
Security Class: | Unclassified |
---|---|
Data Access Constraints: |
None |
Data Use Constraints: |
NOAA requests that all individuals who download NSandT data acknowledge the source of these data in any reports, papers, or presentations. If you publish these data, please include a statement similar to: "Some or all of the data described in this article were produced by NOAA through its National Status and Trends Program". |
Distribution Information
Distribution 1
Download URL: | https://products.coastalscience.noaa.gov/collections/ltmonitoring/nsandt/default.aspx |
---|---|
Distributor: | |
Description: |
Live Data and Maps |
File Type (Deprecated): | XML |
Distribution Format: | XML (Structured Text) |
Distribution 2
Download URL: | https://products.coastalscience.noaa.gov/collections/ltmonitoring/nsandt/default.aspx |
---|---|
Distributor: | |
Description: |
Live Data and Maps |
File Type (Deprecated): | ASCII |
Distribution Format: | Text (Unstructured) |
URLs
URL 1
URL: | https://products.coastalscience.noaa.gov/collections/ltmonitoring/nsandt/default.aspx |
---|---|
URL Type: |
Online Resource
|
Activity Log
Activity Log 1
Activity Date/Time: | 2016-11-16 |
---|---|
Description: |
Date that the source FGDC record was last modified. |
Activity Log 2
Activity Date/Time: | 2017-04-05 |
---|---|
Description: |
Converted from FGDC Content Standards for Digital Geospatial Metadata (version FGDC-STD-001-1998) using 'fgdc_to_inport_xml.pl' script. Contact Tyler Christensen (NOS) for details. |
Activity Log 3
Activity Date/Time: | 2017-09-13 |
---|---|
Description: |
Partial upload of Spatial Info section only. |
Activity Log 4
Activity Date/Time: | 2018-02-08 |
---|---|
Description: |
Partial upload of Positional Accuracy fields only. |
Technical Environment
Description: |
Microsoft Windows 2000 Version 5.0 (Build 2195) Service Pack 3; ESRI ArcCatalog 8.3.0.800 |
---|
Data Quality
Horizontal Positional Accuracy: |
The same kind of field/site data have been supplied since the start of the Benthic Surveillance Project, in 1984. Original site coordinates were derived from Loran-C time conversions. Early sites information resulting from Loran-C was converted from time delay information to latitudes and longitudes. These earlier data may be suspect when sites were located close to large structures that could have interfered with accurate time delays. When GPS was first available the signal was intentionally degrades so earlier coordinate information, even if it resulted from GPS, is not as accurate as data would be today. Because fish are not sessile, fish trawls have been made along different tracks in the water body of interest. The latitude/longitude coordinates provided in this file represent a nominal site center and trawling occurs within a 1 km radius of this location. |
---|---|
Completeness Report: |
The quality of the analytical data generated by the NSandT Program is overseen by the QA Project component, which has been in operation since 1985 and is designed to document sampling and analytical procedures, and to reduce intralaboratory and interlaboratory variation. The QA Project documentation will facilitate comparisons between different monitoring programs with similar QA activities and thus will extend the temporal and spatial scale of such programs. To document laboratory expertise, the QA Project requires all NSandT laboratories to participate in a continuing series of intercomparison exercises utilizing a variety of materials. The organic analytical intercomparison exercises are coordinated by the NIST, and the inorganic exercises by the National Research Council (NRC) of Canada. Details of quality assurance for the Benthic Surveillance Program can be found in Lauenstein and Cantillo, 1993. |
Conceptual Consistency: |
The analytical instruments were calibrated by standard laboratory procedures including: constructing calibration curves, running blank and spiked quality control samples and analyzing standard reference materials. To assess the reproducibility of results every tissue sample was analyzed in duplicate. |
Lineage
Process Steps
Process Step 1
Description: |
The primary collection apparatus was Otter trawls. Occasionally, fish were taken with hook and line, or with seine nets. These alternate collection methods were necessary because larger fish, such as older Atlantic croaker, were able to avoid an Otter trawl, or were found in untrawlable habitats such as shallow water, along marsh edges, and over oyster reefs. Fish liver tissue samples were analyzed for DNA-xenobiotic adducts in liver via Phosphorus 32-postlabeling assay to indicate genotoxic exposure. The analysis of DNA adducts by Phosphorus 32-postlabeling is a multistep process involving a series of biochemical reactions. First, DNA is hydrolyzed enzymatically to 3'monophosphates. The digest is then enriched in xenobiotic-modified mononucleotides by the selective removal of normal nucleotides. Following the enrichment step the adducted DNA is enzymatically labeled at the 5'-hydroxyl position with [Phosphorus 32] phosphate to form [5'-Phosphorus 32] deoxyribonucleoside 3',5'-bisphosphates. Separation of the Phosphorus 32-labeled adducts is usually accomplished by two-dimensional, thin-layer chromatography (TLC) on polyethyleneimine (PEI)-modified cellulose sheets. Autoradiography or storage phosphor imaging (Reichert et al., 1992) is then used to locate the radiolabeled adducts on the chromatogram (Reichert and French, 1994).The analytical instruments were calibrated by standard laboratory procedures including: constructing calibration curves, running blank and spiked quality control samples and analyzing standard reference materials. |
---|---|
Process Date/Time: | 1991-01-01 00:00:00 |
Child Items
Rubric scores updated every 15m
Type | Title | |
---|---|---|
Entity | Dataset Parameters for Benthic Surveillance DNA Xenobiotic Adducts data |
Catalog Details
Catalog Item ID: | 39258 |
---|---|
GUID: | gov.noaa.nmfs.inport:39258 |
Metadata Record Created By: | Tyler Christensen |
Metadata Record Created: | 2017-04-05 12:51+0000 |
Metadata Record Last Modified By: | SysAdmin InPortAdmin |
Metadata Record Last Modified: | 2023-10-17 16:12+0000 |
Metadata Record Published: | 2018-02-08 |
Owner Org: | NCCOS |
Metadata Publication Status: | Published Externally |
Do Not Publish?: | N |
Metadata Last Review Date: | 2018-02-08 |
Metadata Review Frequency: | 1 Year |
Metadata Next Review Date: | 2019-02-08 |