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Title: original_data.csv
Short Name: Orig data Bacteriologial summary for captive loggerheads
Abstract:

The database contains a summary of bacteria which have been isolated in sea turtles dead and alive at the NOAA Galveston Laboratory and is based on reports received from the Texas Veterinary Diagnosic Laboratory in College Station, Texas.

Purpose:

Health assessment

Keywords

Theme Keywords

Thesaurus Keyword
UNCONTROLLED
None bacteria
None bacteriology
None Caretta caretta
None Kemp's ridley
None Lepidochelys kempii
None loggerhead
None sea turtles

Physical Location

Organization: Southeast Fisheries Science Center
City: Miami
State/Province: FL
Country: USA
Location Description:

Location Of The Main Office Of The South East Fisheries Science Center

Entity Information

Entity Type: Spreadsheet
Description:

The database contains a summary of bacteria which have been isolated in sea turtles dead and alive at the NOAA Galveston Laboratory and is based on reports received from the Texas Veterinary Diagnosic Laboratory in College Station, Texas.

Data Attributes

Attribute Summary

Rubric Score Primary Key? Name Type Description
100
Turtle ID CHARACTER NOAA sea turtle identification code made up from the abbreviated genus species for loggerhead [Cc] followed by the year-class, then the consecutive turtle number in that year class to receive medical treatment
100
Accession # CHARACTER A sample number issued by the laboratory analyzing the sample
100
Date of Death/Sample Date Date sample was taken
100
Sample Location CHARACTER Location on sea turtle that was swabbed and produced the sample to be analyzed
100
Acinetobacter sp. NUMERIC a genus of Gram-negative bacteria belonging to the wider class of Gammaproteobacteria
100
Aeromonas sp. NUMERIC is a genus of Gram-negative, facultative anaerobic, rod-shaped bacteria that morphologically resembles members of the family Enterobacteriaceae
100
Aeromonas hydrophila NUMERIC a heterotrophic, Gram-negative, rod-shaped bacterium mainly found in areas with a warm climate
100
Aeromonas sobria NUMERIC a genus of Gram-negative, facultative anaerobic, rod-shaped bacteria that morphologically resembles members of the family Enterobacteriaceae
100
Alcaligenes faecalis NUMERIC a species of Gram-negative, rod-shaped bacteria commonly found in the environment.
100
Alcaligenes xylosoxidans NUMERIC Achromobacter xylosoxidans (formerly Alcaligenes xylosoxidans) is a Gram-negative, aerobic, oxidase- and catalase-positive, motile bacterium with peritrichous flagella, from the genus Achromobacter. It is generally found in wet environments
100
Bacillus sp. NUMERIC a genus of gram-positive, rod-shaped bacteria and a member of the phylum Firmicutes. Bacillus species can be obligate aerobes (oxygen reliant), or facultative anaerobes (having the ability to be aerobic or anaerobic)
100
Bacillus cereus NUMERIC a Gram-positive, rod-shaped, aerobic, motile, beta hemolytic bacterium commonly found in soil and food
100
Burkholderia cepacia NUMERIC is an opportunistic human pathogen that most often causes pneumonia in immunocompromised individuals with underlying lung disease
100
Chromobacterium violaceum NUMERIC a Gram-negative, facultative anaerobic, non-sporing coccobacillus. It is motile with the help of a single flagellum which is located at the pole of the coccobacillus. It is part of the normal flora of water and soil of tropical and sub-tropical regions of the world
100
Citrobacter sp. NUMERIC a genus of Gram-negative coliform bacteria in the Enterobacteriaceae family
100
Citrobacter freundii NUMERIC a species of facultative, anaerobic Gram-negative bacilli of the Enterobacteriaceae family.The bacteria are long bacterial rods C. freundii is a soil organism, but can also be found in water, sewage, food and in the intestinal tracts of animals and humans.
100
Clostridium sp. NUMERIC a genus of Gram-positive bacteria, which includes several significant human pathogens, most notably the causative agent of botulism. Clostridium species inhabit soils and the intestinal tract of animals, including humans
100
Corynebacterium sp. NUMERIC a genus of bacteria that are gram-positive and aerobic. They are bacilli (rod-shaped), and in some phases of life they are, more particularly, club-shaped
100
Enterics NUMERIC bacteria are bacteria of the intestines, and may refer to: Gut flora, which are always present and usually harmless. Pathogenic bacteria of bacterial gastroenteritis. The taxonomic family Enterobacteriaceae
100
Enterobacter sp. NUMERIC a genus of common Gram-negative, facultatively anaerobic, rod-shaped, non-spore-forming bacteria of the family Enterobacteriaceae
100
Enterococcus sp. NUMERIC a large genus of lactic acid bacteria of the phylum Firmicutes. Enterococci are Gram-positive cocci that often occur in pairs (diplococci) or short chains, and are difficult to distinguish from streptococci on physical characteristics alone
100
Escherichia coli NUMERIC is a gram-negative, facultatively anaerobic, rod-shaped bacterium of the genus Escherichia that is commonly found in the lower intestine of warm-blooded organisms (endotherms)
100
Fungi NUMERIC Fungi can be single celled or very complex multicellular organisms. They are found in just about any habitat but most live on the land, mainly in soil or on plant material rather than in sea or fresh water
100
Gram Negative Non-fermenter NUMERIC a taxonomic heterogene group of bacteria of the division Proteobacteria, which can not catabolize glucose and therefore are not able to ferment. The coccoid or bacillary bacteria can be found in soil or wet areas.
100
Gram Negative Rod NUMERIC a group of bacteria that do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation
100
Gram Positive Rod NUMERIC are a bacteria that give a positive result in the Gram stain test
100
Gram Negative pleomorphic Rod NUMERIC a group of bacteria that can cause respiratory problems
100
Klebsiella pneumoniae NUMERIC a Gram-negative, nonmotile, encapsulated, lactose-fermenting, facultative anaerobic, rod-shaped bacterium
100
Klebsiella oxytoca NUMERIC a Gram-negative, rod-shaped bacterium that is closely related to K. pneumoniae
100
Listonella anguillarum NUMERIC a Gram-negative marine bacterium in the family Vibrionaceae. The correct name nowadays is Vibrio anguillarum
100
Mixed anaerobes NUMERIC are bacteria do not grow on solid media in room air. Anaerobic bacteria are a common cause of infections, some of which can be serious and life-threatening
100
Mixed Bacterial Growth NUMERIC Bacteria are present but cannot be identified to species
100
Moraxella sp. NUMERIC a genus of Gram-negative bacteria in the Moraxellaceae family and often associated with respiratory disease.
100
Moraxella osloensis NUMERIC a species of Gram-negative oxidase positive, aerobic bacteria within the family Moraxellaceae.
100
Morganella sp. NUMERIC a species of gram-negative bacteria.
100
Morganella morganii NUMERIC a species of gram-negative bacteria. It has a commensal relationship within the intestinal tracts of humans, mammals, and reptiles as normal flora
100
Mycobacterium sp. (Rapidly-Growing) NUMERIC The genus includes pathogens known to cause serious diseases in mammals, including tuberculosis. Mycobacteria have been observed to grow in a mold-like fashion on the surface of cultures.
100
Negative Culture Anaerobes NUMERIC No anaerobic bacteria were present
100
Negative Culture Salmonella NUMERIC Salmonella bacteria was not present
100
Nocardia sp. NUMERIC a genus of weakly staining Gram-positive, catalase-positive, rod-shaped bacteria. Nocardia species are found worldwide in soil rich in organic matter.
100
Ochrobactrum sp. NUMERIC a bacterial genus that belongs to Brucellaceae in the Rhizobiales
100
Pantoea sp. NUMERIC a genus of Gram-negative bacteria of the family Enterobacteriaceae, recently separated from the Enterobacter genus
100
Pasteurella sp. NUMERIC a genus of Gram-negative, facultatively anaerobic bacteria. Many Pasteurella species are zoonotic pathogens, and humans can acquire an infection from domestic animal bites
100
Penicillium sp. NUMERIC a genus of ascomycetous fungi of major importance in the natural environment as well as food and drug production
100
Photobacterium damselae NUMERIC a gram-negative rod-shaped bacterium that causes disease in fish.
100
Providencia sp. NUMERIC a Gram negative, motile bacterium of the family Enterobacteriaceae and can cause urinary tract infections
100
Proteus sp. NUMERIC Proteus bacilli are widely distributed in nature as saprophytes, being found in decomposing animal matter, sewage, manure soil, and human and animal feces. They are opportunistic pathogens, commonly responsible for urinary and septic infections.
100
Proteus mirabilis NUMERIC a Gram-negative, facultatively anaerobic, rod-shaped bacterium. It shows swarming motility and urease activity. It is widely distributed in soil and water.
100
Proteus vulgaris NUMERIC a rod-shaped, nitrate-reducing, indole+ and catalase-positive, hydrogen sulfide-producing, Gram-negative bacterium that inhabits the intestinal tracts of humans and animals. It can be found in soil, water, and fecal matter.
100
Pseudomonas sp. NUMERIC a genus of Gram-negative, aerobic Gammaproteobacteria, belonging to the family Pseudomonadaceae
100
Pseudomonas aeruginosa NUMERIC a common Gram-negative, rod-shaped bacterium that can cause disease in plants and animals, including humans
100
Pseudomonas pseudoalcaligenes NUMERIC an aerobic, Gram-negative soil bacterium.
100
Pseudomonas putida NUMERIC a Gram-negative, rod-shaped, saprotrophic soil bacterium
100
Rhodococcus equi NUMERIC a Gram-positive coccobacillus bacterium. The organism is commonly found in dry and dusty soil
100
Salmonella sp. NUMERIC a genus of rod-shaped (bacillus) gram-negative bacterium of the Enterobacteriaceae family. The two species of Salmonella are Salmonella enterica and Salmonella bongori. S. enterica subspecies are found worldwide in all warm-blooded animals, and in the environment. S. bongori is restricted to cold-blooded animals particularly reptiles. Strains of Salmonella cause illnesses such as typhoid fever, paratyphoid fever, and food poisoning
100
Shewanella sp. NUMERIC family of marine bacteria, some species within it were formerly classed as Alteromonas. Shewanella bacteria are a normal component of the surface flora of fish and are implicated in fish spoilage.
100
Shewanella putrefaciens NUMERIC a Gram-negative pleomorphic bacterium. It has been isolated from marine environments It is also one of the organisms associated with the odor of rotting fish, as it is a marine organism which produces trimethylamine
100
Sphingomonas paucimobilis NUMERIC an aerobic Gram-negative soil bacillus that has a single polar flagellum with slow motility.
100
Staphylococcus sp. NUMERIC a genus includes at least 40 species. Most are harmless and reside normally on the skin and mucous membranes of humans and other organisms. Found worldwide, they are a small component of soil microbial flora.
100
Streptococcus sp. NUMERIC a genus of coccus (spherical) Gram-positive bacteria belonging to the phylum Firmicutes
100
Tsukamurella sp. NUMERIC A genus of facultatively pathogenic actinomycetes that infect immunocompromised hosts, sites with foreign body or chronic infections
100
Vibrio sp. NUMERIC a genus of Gram-negative bacteria, possessing a curved-rod shape. Several species of which can cause foodborne infection, usually associated with eating undercooked seafood. Typically found in seawater.
100
Vibrio alginolyticus NUMERIC a Gram-negative marine bacterium. It is medically important since it causes wound infection
100
Vibrio fluvialis NUMERIC V. fluvialis can be found in salt waters globally and also has the potential to infect both humans and a variety of crustaceans.
100
Vibrio harveyi NUMERIC V. harveyi can be found free-swimming in tropical marine waters, commensally in the gut microflora of marine animals, and as both a primary and opportunistic pathogen of marine animals
100
Vibrio parahaemolyticus NUMERIC a curved, rod-shaped, Gram-negative bacterium found in brackish saltwater.
100
Vibrio vulnificus NUMERIC a species of Gram-negative, motile, curved, rod-shaped (bacillus), pathogenic bacteria of the genus Vibrio. Present in marine environments such as estuaries, brackish ponds, or coastal areas
100
Negative Culture Vibrio sp. NUMERIC No Vibrio sp. were present
100
Isolated Character Indicates what specific bacteria was isolated
100
Sensitivity Test (Y/N) CHARACTER Sensitivity tests expose the bacteria to antibacterial agents to determine which would be most effective at killing the bacteria. (Y)es or (N)o response
100
Cause of Death/Ilness Identified (put in diagnosis here) CHARACTER If the cause of death was positively determined by necropsy, histology, or bacteriology the results are diagnosis is listed here
100
Cause of Death/Illness Bacteria Related (Y/N) CHARACTER If the diagnosis indicated that bacterial infection was the primary cause of death, it is noted here

Attribute Details

Turtle ID

CC ID: 703548
Seq. Order: 1
Data Storage Type: CHARACTER
Max Length: 10
Required: No
Primary Key: No
Status: Active
Description:

NOAA sea turtle identification code made up from the abbreviated genus species for loggerhead [Cc] followed by the year-class, then the consecutive turtle number in that year class to receive medical treatment

Accession #

CC ID: 703483
Seq. Order: 2
Data Storage Type: CHARACTER
Max Length: 10
Required: No
Primary Key: No
Status: Active
Description:

A sample number issued by the laboratory analyzing the sample

Date of Death/Sample

CC ID: 703500
Seq. Order: 3
Data Storage Type: Date
Max Length: 10
Required: No
Primary Key: No
Status: Active
Description:

Date sample was taken

Format Mask: MM/DD/YYYY

Sample Location

CC ID: 703540
Seq. Order: 4
Data Storage Type: CHARACTER
Max Length: 20
Required: No
Primary Key: No
Status: Active
Description:

Location on sea turtle that was swabbed and produced the sample to be analyzed

Acinetobacter sp.

CC ID: 703484
Seq. Order: 5
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of Gram-negative bacteria belonging to the wider class of Gammaproteobacteria

Aeromonas sp.

CC ID: 703487
Seq. Order: 6
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

is a genus of Gram-negative, facultative anaerobic, rod-shaped bacteria that morphologically resembles members of the family Enterobacteriaceae

Aeromonas hydrophila

CC ID: 703485
Seq. Order: 7
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a heterotrophic, Gram-negative, rod-shaped bacterium mainly found in areas with a warm climate

Aeromonas sobria

CC ID: 703486
Seq. Order: 8
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of Gram-negative, facultative anaerobic, rod-shaped bacteria that morphologically resembles members of the family Enterobacteriaceae

Alcaligenes faecalis

CC ID: 703488
Seq. Order: 9
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a species of Gram-negative, rod-shaped bacteria commonly found in the environment.

Alcaligenes xylosoxidans

CC ID: 703489
Seq. Order: 10
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

Achromobacter xylosoxidans (formerly Alcaligenes xylosoxidans) is a Gram-negative, aerobic, oxidase- and catalase-positive, motile bacterium with peritrichous flagella, from the genus Achromobacter. It is generally found in wet environments

Bacillus sp.

CC ID: 703491
Seq. Order: 11
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of gram-positive, rod-shaped bacteria and a member of the phylum Firmicutes. Bacillus species can be obligate aerobes (oxygen reliant), or facultative anaerobes (having the ability to be aerobic or anaerobic)

Bacillus cereus

CC ID: 703490
Seq. Order: 12
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a Gram-positive, rod-shaped, aerobic, motile, beta hemolytic bacterium commonly found in soil and food

Burkholderia cepacia

CC ID: 703492
Seq. Order: 13
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

is an opportunistic human pathogen that most often causes pneumonia in immunocompromised individuals with underlying lung disease

Chromobacterium violaceum

CC ID: 703495
Seq. Order: 14
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a Gram-negative, facultative anaerobic, non-sporing coccobacillus. It is motile with the help of a single flagellum which is located at the pole of the coccobacillus. It is part of the normal flora of water and soil of tropical and sub-tropical regions of the world

Citrobacter sp.

CC ID: 703497
Seq. Order: 15
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of Gram-negative coliform bacteria in the Enterobacteriaceae family

Citrobacter freundii

CC ID: 703496
Seq. Order: 16
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a species of facultative, anaerobic Gram-negative bacilli of the Enterobacteriaceae family.The bacteria are long bacterial rods C. freundii is a soil organism, but can also be found in water, sewage, food and in the intestinal tracts of animals and humans.

Clostridium sp.

CC ID: 703498
Seq. Order: 17
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of Gram-positive bacteria, which includes several significant human pathogens, most notably the causative agent of botulism. Clostridium species inhabit soils and the intestinal tract of animals, including humans

Corynebacterium sp.

CC ID: 703499
Seq. Order: 18
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of bacteria that are gram-positive and aerobic. They are bacilli (rod-shaped), and in some phases of life they are, more particularly, club-shaped

Enterics

CC ID: 703501
Seq. Order: 19
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

bacteria are bacteria of the intestines, and may refer to: Gut flora, which are always present and usually harmless. Pathogenic bacteria of bacterial gastroenteritis. The taxonomic family Enterobacteriaceae

Enterobacter sp.

CC ID: 703502
Seq. Order: 20
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of common Gram-negative, facultatively anaerobic, rod-shaped, non-spore-forming bacteria of the family Enterobacteriaceae

Enterococcus sp.

CC ID: 703503
Seq. Order: 21
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a large genus of lactic acid bacteria of the phylum Firmicutes. Enterococci are Gram-positive cocci that often occur in pairs (diplococci) or short chains, and are difficult to distinguish from streptococci on physical characteristics alone

Escherichia coli

CC ID: 703504
Seq. Order: 22
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

is a gram-negative, facultatively anaerobic, rod-shaped bacterium of the genus Escherichia that is commonly found in the lower intestine of warm-blooded organisms (endotherms)

Fungi

CC ID: 703505
Seq. Order: 23
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

Fungi can be single celled or very complex multicellular organisms. They are found in just about any habitat but most live on the land, mainly in soil or on plant material rather than in sea or fresh water

Gram Negative Non-fermenter

CC ID: 703506
Seq. Order: 24
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a taxonomic heterogene group of bacteria of the division Proteobacteria, which can not catabolize glucose and therefore are not able to ferment. The coccoid or bacillary bacteria can be found in soil or wet areas.

Gram Negative Rod

CC ID: 703507
Seq. Order: 25
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a group of bacteria that do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation

Gram Positive Rod

CC ID: 703509
Seq. Order: 26
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

are a bacteria that give a positive result in the Gram stain test

Gram Negative pleomorphic Rod

CC ID: 703508
Seq. Order: 27
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a group of bacteria that can cause respiratory problems

Klebsiella pneumoniae

CC ID: 703512
Seq. Order: 28
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a Gram-negative, nonmotile, encapsulated, lactose-fermenting, facultative anaerobic, rod-shaped bacterium

Klebsiella oxytoca

CC ID: 703511
Seq. Order: 29
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a Gram-negative, rod-shaped bacterium that is closely related to K. pneumoniae

Listonella anguillarum

CC ID: 703513
Seq. Order: 30
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a Gram-negative marine bacterium in the family Vibrionaceae. The correct name nowadays is Vibrio anguillarum

Mixed anaerobes

CC ID: 703515
Seq. Order: 31
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

are bacteria do not grow on solid media in room air. Anaerobic bacteria are a common cause of infections, some of which can be serious and life-threatening

Mixed Bacterial Growth

CC ID: 703514
Seq. Order: 32
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

Bacteria are present but cannot be identified to species

Moraxella sp.

CC ID: 703517
Seq. Order: 33
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of Gram-negative bacteria in the Moraxellaceae family and often associated with respiratory disease.

Moraxella osloensis

CC ID: 703516
Seq. Order: 34
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a species of Gram-negative oxidase positive, aerobic bacteria within the family Moraxellaceae.

Morganella sp.

CC ID: 703519
Seq. Order: 35
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a species of gram-negative bacteria.

Morganella morganii

CC ID: 703518
Seq. Order: 36
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a species of gram-negative bacteria. It has a commensal relationship within the intestinal tracts of humans, mammals, and reptiles as normal flora

Mycobacterium sp. (Rapidly-Growing)

CC ID: 703520
Seq. Order: 37
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

The genus includes pathogens known to cause serious diseases in mammals, including tuberculosis. Mycobacteria have been observed to grow in a mold-like fashion on the surface of cultures.

Negative Culture Anaerobes

CC ID: 703521
Seq. Order: 38
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

No anaerobic bacteria were present

Negative Culture Salmonella

CC ID: 703522
Seq. Order: 39
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

Salmonella bacteria was not present

Nocardia sp.

CC ID: 703524
Seq. Order: 40
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of weakly staining Gram-positive, catalase-positive, rod-shaped bacteria. Nocardia species are found worldwide in soil rich in organic matter.

Ochrobactrum sp.

CC ID: 703525
Seq. Order: 41
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a bacterial genus that belongs to Brucellaceae in the Rhizobiales

Pantoea sp.

CC ID: 703526
Seq. Order: 42
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of Gram-negative bacteria of the family Enterobacteriaceae, recently separated from the Enterobacter genus

Pasteurella sp.

CC ID: 703527
Seq. Order: 43
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of Gram-negative, facultatively anaerobic bacteria. Many Pasteurella species are zoonotic pathogens, and humans can acquire an infection from domestic animal bites

Penicillium sp.

CC ID: 703528
Seq. Order: 44
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of ascomycetous fungi of major importance in the natural environment as well as food and drug production

Photobacterium damselae

CC ID: 703529
Seq. Order: 45
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a gram-negative rod-shaped bacterium that causes disease in fish.

Providencia sp.

CC ID: 703533
Seq. Order: 46
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a Gram negative, motile bacterium of the family Enterobacteriaceae and can cause urinary tract infections

Proteus sp.

CC ID: 703531
Seq. Order: 47
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

Proteus bacilli are widely distributed in nature as saprophytes, being found in decomposing animal matter, sewage, manure soil, and human and animal feces. They are opportunistic pathogens, commonly responsible for urinary and septic infections.

Proteus mirabilis

CC ID: 703530
Seq. Order: 48
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a Gram-negative, facultatively anaerobic, rod-shaped bacterium. It shows swarming motility and urease activity. It is widely distributed in soil and water.

Proteus vulgaris

CC ID: 703532
Seq. Order: 49
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a rod-shaped, nitrate-reducing, indole+ and catalase-positive, hydrogen sulfide-producing, Gram-negative bacterium that inhabits the intestinal tracts of humans and animals. It can be found in soil, water, and fecal matter.

Pseudomonas sp.

CC ID: 703537
Seq. Order: 50
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of Gram-negative, aerobic Gammaproteobacteria, belonging to the family Pseudomonadaceae

Pseudomonas aeruginosa

CC ID: 703534
Seq. Order: 51
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a common Gram-negative, rod-shaped bacterium that can cause disease in plants and animals, including humans

Pseudomonas pseudoalcaligenes

CC ID: 703535
Seq. Order: 52
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

an aerobic, Gram-negative soil bacterium.

Pseudomonas putida

CC ID: 703536
Seq. Order: 53
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a Gram-negative, rod-shaped, saprotrophic soil bacterium

Rhodococcus equi

CC ID: 703538
Seq. Order: 54
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a Gram-positive coccobacillus bacterium. The organism is commonly found in dry and dusty soil

Salmonella sp.

CC ID: 703539
Seq. Order: 55
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of rod-shaped (bacillus) gram-negative bacterium of the Enterobacteriaceae family. The two species of Salmonella are Salmonella enterica and Salmonella bongori. S. enterica subspecies are found worldwide in all warm-blooded animals, and in the environment. S. bongori is restricted to cold-blooded animals particularly reptiles. Strains of Salmonella cause illnesses such as typhoid fever, paratyphoid fever, and food poisoning

Shewanella sp.

CC ID: 703543
Seq. Order: 56
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

family of marine bacteria, some species within it were formerly classed as Alteromonas. Shewanella bacteria are a normal component of the surface flora of fish and are implicated in fish spoilage.

Shewanella putrefaciens

CC ID: 703542
Seq. Order: 57
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a Gram-negative pleomorphic bacterium. It has been isolated from marine environments It is also one of the organisms associated with the odor of rotting fish, as it is a marine organism which produces trimethylamine

Sphingomonas paucimobilis

CC ID: 703544
Seq. Order: 58
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

an aerobic Gram-negative soil bacillus that has a single polar flagellum with slow motility.

Staphylococcus sp.

CC ID: 703545
Seq. Order: 59
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus includes at least 40 species. Most are harmless and reside normally on the skin and mucous membranes of humans and other organisms. Found worldwide, they are a small component of soil microbial flora.

Streptococcus sp.

CC ID: 703546
Seq. Order: 60
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of coccus (spherical) Gram-positive bacteria belonging to the phylum Firmicutes

Tsukamurella sp.

CC ID: 703547
Seq. Order: 61
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

A genus of facultatively pathogenic actinomycetes that infect immunocompromised hosts, sites with foreign body or chronic infections

Vibrio sp.

CC ID: 703553
Seq. Order: 62
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a genus of Gram-negative bacteria, possessing a curved-rod shape. Several species of which can cause foodborne infection, usually associated with eating undercooked seafood. Typically found in seawater.

Vibrio alginolyticus

CC ID: 703549
Seq. Order: 63
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a Gram-negative marine bacterium. It is medically important since it causes wound infection

Vibrio fluvialis

CC ID: 703550
Seq. Order: 64
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

V. fluvialis can be found in salt waters globally and also has the potential to infect both humans and a variety of crustaceans.

Vibrio harveyi

CC ID: 703551
Seq. Order: 65
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

V. harveyi can be found free-swimming in tropical marine waters, commensally in the gut microflora of marine animals, and as both a primary and opportunistic pathogen of marine animals

Vibrio parahaemolyticus

CC ID: 703552
Seq. Order: 66
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a curved, rod-shaped, Gram-negative bacterium found in brackish saltwater.

Vibrio vulnificus

CC ID: 703554
Seq. Order: 67
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

a species of Gram-negative, motile, curved, rod-shaped (bacillus), pathogenic bacteria of the genus Vibrio. Present in marine environments such as estuaries, brackish ponds, or coastal areas

Negative Culture Vibrio sp.

CC ID: 703523
Seq. Order: 68
Data Storage Type: NUMERIC
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

No Vibrio sp. were present

Isolated

CC ID: 703510
Seq. Order: 69
Data Storage Type: Character
Max Length: 50
Required: No
Primary Key: No
Status: Active
Description:

Indicates what specific bacteria was isolated

Sensitivity Test (Y/N)

CC ID: 703541
Seq. Order: 70
Data Storage Type: CHARACTER
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

Sensitivity tests expose the bacteria to antibacterial agents to determine which would be most effective at killing the bacteria. (Y)es or (N)o response

Allowed Values: Y N

Cause of Death/Ilness Identified (put in diagnosis here)

CC ID: 703494
Seq. Order: 71
Data Storage Type: CHARACTER
Max Length: 200
Required: No
Primary Key: No
Status: Active
Description:

If the cause of death was positively determined by necropsy, histology, or bacteriology the results are diagnosis is listed here

Cause of Death/Illness Bacteria Related (Y/N)

CC ID: 703493
Seq. Order: 72
Data Storage Type: CHARACTER
Max Length: 1
Required: No
Primary Key: No
Status: Active
Description:

If the diagnosis indicated that bacterial infection was the primary cause of death, it is noted here

Allowed Values: Y N

Support Roles

Data Steward

CC ID: 703555
Date Effective From: 2002
Date Effective To:
Contact (Person): Higgins, Benjamin
Address: 4700 Avenue U
Galveston, TX 77551
Email Address: ben.higgins@noaa.gov
Phone: 409-766-3670
Contact Instructions:

Phone or email

Distributor

CC ID: 703556
Date Effective From: 2017
Date Effective To:
Contact (Organization): National Centers for Environmental Information - Silver Spring, Maryland (NCEI-MD)
Address: NOAA/NESDIS E/OC SSMC3, 4th Floor, 1351 East-West Highway
Silver Spring, MD 20910-3282
Phone: (301) 713-3277
Contact Instructions:

Phone or email

Metadata Contact

CC ID: 703557
Date Effective From: 2002
Date Effective To:
Contact (Person): Higgins, Benjamin
Address: 4700 Avenue U
Galveston, TX 77551
Email Address: ben.higgins@noaa.gov
Phone: 409-766-3670
Contact Instructions:

Contact by email preferred.

Point of Contact

CC ID: 703558
Date Effective From: 2016
Date Effective To:
Contact (Person): Baumer, Tim J
Address: 4700 Avenue U
Galveston, TX 77551
Email Address: tim.baumer@noaa.gov
Phone: 409-766-3784
Contact Instructions:

Contact by email preferred.

Distribution Information

Distribution 1

CC ID: 703566
Start Date: 2017
End Date: Present
Download URL: https://www.nodc.noaa.gov/archive/arc0102/0157625/2.2/data/0-data/Galveston_Turtle_Program/26903/CSV/Original_Data.csv
Distributor: National Centers for Environmental Information - Silver Spring, Maryland (NCEI-MD) (2017 - Present)
File Name: Original_Data.csv
Compression: Uncompressed

Catalog Details

Catalog Item ID: 50697
GUID: gov.noaa.nmfs.inport:50697
Metadata Record Created By: Lee M Weinberger
Metadata Record Created: 2017-12-07 14:11+0000
Metadata Record Last Modified By: Lee M Weinberger
Metadata Record Last Modified: 2021-04-29 12:26+0000
Metadata Record Published: 2021-04-29
Owner Org: SEFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Next Review Date: 2022-04-30