Renamed_Data_Table.csv
Entity (ENT) | Southeast Fisheries Science Center (SEFSC)GUID: gov.noaa.nmfs.inport:50698 | Updated: October 3, 2024 | Published / External
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Summary
The database contains a summary of bacteria which have been isolated in sea turtles dead and alive at the NOAA Galveston Laboratory and is based on reports received from the Texas Veterinary Diagnosic Laboratory in College Station, Texas.
DescriptionThe database contains a summary of bacteria which have been isolated in sea turtles dead and alive at the NOAA Galveston Laboratory and is based on reports received from the Texas Veterinary Diagnosic Laboratory in College Station, Texas.
Entity Information
Entity Type
Spreadsheet
Data Attribute / Type | Description |
---|---|
Turtle_ID
CHARACTER |
NOAA sea turtle identification code made up from the abbreviated genus species for loggerhead [Cc] followed by the year-class, then the consecutive turtle number in that year class to receive medical treatment |
Accession_Number
CHARACTER |
A sample number issued by the laboratory analyzing the sample |
Date_ of_ Death_or_Sample
Date |
Date sample was taken |
Sample_Location
CHARACTER |
Location on sea turtle that was swabbed and produced the sample to be analyzed |
Acinetobacter_sp.
NUMERIC |
a genus of Gram-negative bacteria belonging to the wider class of Gammaproteobacteria |
Aeromonas_sp.
NUMERIC |
is a genus of Gram-negative, facultative anaerobic, rod-shaped bacteria that morphologically resembles members of the family Enterobacteriaceae |
Aeromonas_hydrophila
NUMERIC |
a heterotrophic, Gram-negative, rod-shaped bacterium mainly found in areas with a warm climate |
Aeromonas_sobria
NUMERIC |
a genus of Gram-negative, facultative anaerobic, rod-shaped bacteria that morphologically resembles members of the family Enterobacteriaceae |
Alcaligenes_faecalis
NUMERIC |
a species of Gram-negative, rod-shaped bacteria commonly found in the environment. |
Alcaligenes_xylosoxidans
NUMERIC |
Achromobacter xylosoxidans (formerly Alcaligenes xylosoxidans) is a Gram-negative, aerobic, oxidase- and catalase-positive, motile bacterium with peritrichous flagella, from the genus Achromobacter. It is generally found in wet environments |
Bacillus_sp.
NUMERIC |
a genus of gram-positive, rod-shaped bacteria and a member of the phylum Firmicutes. Bacillus species can be obligate aerobes (oxygen reliant), or facultative anaerobes (having the ability to be aerobic or anaerobic) |
Bacillus_cereus
NUMERIC |
a Gram-positive, rod-shaped, aerobic, motile, beta hemolytic bacterium commonly found in soil and food |
Burkholderia_cepacia
NUMERIC |
is an opportunistic human pathogen that most often causes pneumonia in immunocompromised individuals with underlying lung disease |
Chromobacterium_violaceum
NUMERIC |
a Gram-negative, facultative anaerobic, non-sporing coccobacillus. It is motile with the help of a single flagellum which is located at the pole of the coccobacillus. It is part of the normal flora of water and soil of tropical and sub-tropical regions of the world |
Citrobacter_sp.
NUMERIC |
a genus of Gram-negative coliform bacteria in the Enterobacteriaceae family |
Citrobacter_freundii
NUMERIC |
a species of facultative, anaerobic Gram-negative bacilli of the Enterobacteriaceae family.The bacteria are long bacterial rods C. freundii is a soil organism, but can also be found in water, sewage, food and in the intestinal tracts of animals and humans. |
Clostridium_sp.
NUMERIC |
a genus of Gram-positive bacteria, which includes several significant human pathogens, most notably the causative agent of botulism. Clostridium species inhabit soils and the intestinal tract of animals, including humans |
Corynebacterium_sp.
NUMERIC |
a genus of bacteria that are gram-positive and aerobic. They are bacilli (rod-shaped), and in some phases of life they are, more particularly, club-shaped |
Enterics
NUMERIC |
bacteria are bacteria of the intestines, and may refer to: Gut flora, which are always present and usually harmless. Pathogenic bacteria of bacterial gastroenteritis. The taxonomic family Enterobacteriaceae |
Enterobacter_sp.
NUMERIC |
a genus of common Gram-negative, facultatively anaerobic, rod-shaped, non-spore-forming bacteria of the family Enterobacteriaceae |
Enterococcus_sp.
NUMERIC |
a large genus of lactic acid bacteria of the phylum Firmicutes. Enterococci are Gram-positive cocci that often occur in pairs (diplococci) or short chains, and are difficult to distinguish from streptococci on physical characteristics alone |
Escherichia_coli
NUMERIC |
is a gram-negative, facultatively anaerobic, rod-shaped bacterium of the genus Escherichia that is commonly found in the lower intestine of warm-blooded organisms (endotherms) |
Fungi
NUMERIC |
Fungi can be single celled or very complex multicellular organisms. They are found in just about any habitat but most live on the land, mainly in soil or on plant material rather than in sea or fresh water |
Gram_Negative_Non_fermenter
NUMERIC |
a taxonomic heterogene group of bacteria of the division Proteobacteria, which can not catabolize glucose and therefore are not able to ferment. The coccoid or bacillary bacteria can be found in soil or wet areas. |
Gram_Negative_Rod
NUMERIC |
a group of bacteria that do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation |
Gram_Positive_Rod
NUMERIC |
are a bacteria that give a positive result in the Gram stain test |
Gram_Negative_pleomorphic_Rod
NUMERIC |
a group of bacteria that can cause respiratory problems |
Klebsiella_pneumoniae
NUMERIC |
a Gram-negative, nonmotile, encapsulated, lactose-fermenting, facultative anaerobic, rod-shaped bacterium |
Klebsiella_oxytoca
NUMERIC |
a Gram-negative, rod-shaped bacterium that is closely related to K. pneumoniae |
Listonella_anguillarum
NUMERIC |
a Gram-negative marine bacterium in the family Vibrionaceae. The correct name nowadays is Vibrio anguillarum |
Mixed_anaerobes
NUMERIC |
are bacteria do not grow on solid media in room air. Anaerobic bacteria are a common cause of infections, some of which can be serious and life-threatening |
Mixed_Bacterial_Growth
NUMERIC |
Bacteria are present but cannot be identified to species |
Moraxella_sp.
NUMERIC |
a genus of Gram-negative bacteria in the Moraxellaceae family and often associated with respiratory disease. |
Moraxella_osloensis
NUMERIC |
a species of Gram-negative oxidase positive, aerobic bacteria within the family Moraxellaceae. |
Morganella_sp.
NUMERIC |
a species of gram-negative bacteria. |
Morganella_morganii
NUMERIC |
a species of gram-negative bacteria. It has a commensal relationship within the intestinal tracts of humans, mammals, and reptiles as normal flora |
Mycobacterium_sp._(Rapidly-Growing)
NUMERIC |
The genus includes pathogens known to cause serious diseases in mammals, including tuberculosis. Mycobacteria have been observed to grow in a mold-like fashion on the surface of cultures. |
Negative_Culture_Anaerobes
NUMERIC |
No anaerobic bacteria were present |
Negative_Culture_Salmonella
NUMERIC |
Salmonella bacteria was not present |
Nocardia_sp.
NUMERIC |
a genus of weakly staining Gram-positive, catalase-positive, rod-shaped bacteria. Nocardia species are found worldwide in soil rich in organic matter. |
Ochrobactrum_sp.
NUMERIC |
a bacterial genus that belongs to Brucellaceae in the Rhizobiales |
Pantoea_sp.
NUMERIC |
a genus of Gram-negative bacteria of the family Enterobacteriaceae, recently separated from the Enterobacter genus |
Pasteurella_sp.
NUMERIC |
a genus of Gram-negative, facultatively anaerobic bacteria. Many Pasteurella species are zoonotic pathogens, and humans can acquire an infection from domestic animal bites |
Penicillium_sp.
NUMERIC |
a genus of ascomycetous fungi of major importance in the natural environment as well as food and drug production |
Photobacterium_damselae
NUMERIC |
a gram-negative rod-shaped bacterium that causes disease in fish. |
Providencia_sp.
NUMERIC |
a Gram negative, motile bacterium of the family Enterobacteriaceae and can cause urinary tract infections |
Proteus_sp.
NUMERIC |
Proteus bacilli are widely distributed in nature as saprophytes, being found in decomposing animal matter, sewage, manure soil, and human and animal feces. They are opportunistic pathogens, commonly responsible for urinary and septic infections. |
Proteus_mirabilis
NUMERIC |
a Gram-negative, facultatively anaerobic, rod-shaped bacterium. It shows swarming motility and urease activity. It is widely distributed in soil and water. |
Proteus_vulgaris
NUMERIC |
a rod-shaped, nitrate-reducing, indole+ and catalase-positive, hydrogen sulfide-producing, Gram-negative bacterium that inhabits the intestinal tracts of humans and animals. It can be found in soil, water, and fecal matter. |
Pseudomonas_sp.
NUMERIC |
a genus of Gram-negative, aerobic Gammaproteobacteria, belonging to the family Pseudomonadaceae |
Pseudomonas_aeruginosa
NUMERIC |
a common Gram-negative, rod-shaped bacterium that can cause disease in plants and animals, including humans |
Pseudomonas_pseudoalcaligenes
NUMERIC |
an aerobic, Gram-negative soil bacterium. |
Pseudomonas_putida
NUMERIC |
a Gram-negative, rod-shaped, saprotrophic soil bacterium |
Rhodococcus_equi
NUMERIC |
a Gram-positive coccobacillus bacterium. The organism is commonly found in dry and dusty soil |
Salmonella_sp.
NUMERIC |
a genus of rod-shaped (bacillus) gram-negative bacterium of the Enterobacteriaceae family. The two species of Salmonella are Salmonella enterica and Salmonella bongori. S. enterica subspecies are found worldwide in all warm-blooded animals, and in the environment. S. bongori is restricted to cold-blooded animals particularly reptiles. Strains of Salmonella cause illnesses such as typhoid fever, paratyphoid fever, and food poisoning |
Shewanella_sp.
NUMERIC |
family of marine bacteria, some species within it were formerly classed as Alteromonas. Shewanella bacteria are a normal component of the surface flora of fish and are implicated in fish spoilage. |
Shewanella_putrefaciens
NUMERIC |
a Gram-negative pleomorphic bacterium. It has been isolated from marine environments It is also one of the organisms associated with the odor of rotting fish, as it is a marine organism which produces trimethylamine |
Sphingomonas_paucimobilis
NUMERIC |
an aerobic Gram-negative soil bacillus that has a single polar flagellum with slow motility. |
Staphylococcus_sp.
NUMERIC |
a genus includes at least 40 species. Most are harmless and reside normally on the skin and mucous membranes of humans and other organisms. Found worldwide, they are a small component of soil microbial flora. |
Streptococcus_sp.
NUMERIC |
a genus of coccus (spherical) Gram-positive bacteria belonging to the phylum Firmicutes |
Tsukamurella_sp.
NUMERIC |
A genus of facultatively pathogenic actinomycetes that infect immunocompromised hosts, sites with foreign body or chronic infections |
Vibrio_sp.
NUMERIC |
a genus of Gram-negative bacteria, possessing a curved-rod shape. Several species of which can cause foodborne infection, usually associated with eating undercooked seafood. Typically found in seawater. |
Vibrio_alginolyticus
NUMERIC |
a Gram-negative marine bacterium. It is medically important since it causes wound infection |
Vibrio_fluvialis
NUMERIC |
V. fluvialis can be found in salt waters globally and also has the potential to infect both humans and a variety of crustaceans. |
Vibrio_harveyi
NUMERIC |
V. harveyi can be found free-swimming in tropical marine waters, commensally in the gut microflora of marine animals, and as both a primary and opportunistic pathogen of marine animals |
Vibrio_parahaemolyticus
NUMERIC |
a curved, rod-shaped, Gram-negative bacterium found in brackish saltwater. |
Vibrio_vulnificus
NUMERIC |
a species of Gram-negative, motile, curved, rod-shaped (bacillus), pathogenic bacteria of the genus Vibrio. Present in marine environments such as estuaries, brackish ponds, or coastal areas |
Negative_Culture_Vibrio_sp.
NUMERIC |
No Vibrio sp. were present |
Isolated
Character |
Indicates what specific bacteria was isolated |
Sensitivity_Test_Y_or_N
CHARACTER |
Sensitivity tests expose the bacteria to antibacterial agents to determine which would be most effective at killing the bacteria. (Y)es or (N)o response |
Cause_of_Death_or_Ilness_Identified
CHARACTER |
If the cause of death was positively determined by necropsy, histology, or bacteriology the results are diagnosis is listed here |
Cause_of_Death_or_Illness_Bacteria_Related _Y_or_N
CHARACTER |
If the diagnosis indicated that bacterial infection was the primary cause of death, it is noted here |
Distribution Information
-
CSV - Comma Separated Values (Text), 41K
Child Items
No Child Items for this record.
Contact Information
Point of Contact
Tim J Baumer
tim.baumer@noaa.gov
409-766-3784
Metadata Contact
Benjamin Higgins
ben.higgins@noaa.gov
409-766-3670
Item Identification
Title: | Renamed_Data_Table.csv |
---|---|
Short Name: | Renamed data Bacteriologial summary for captive loggerheads |
Abstract: |
The database contains a summary of bacteria which have been isolated in sea turtles dead and alive at the NOAA Galveston Laboratory and is based on reports received from the Texas Veterinary Diagnosic Laboratory in College Station, Texas. |
Purpose: |
Health assessment |
Notes: |
The column names were renamed from the original data and some spurious things were removed from the file |
Keywords
Theme Keywords
Thesaurus | Keyword |
---|---|
UNCONTROLLED | |
None | bacteria |
None | bacteriology |
None | Caretta caretta |
None | Kemp's ridley |
None | Lepidochelys kempii |
None | loggerhead |
None | sea turtles |
Physical Location
Organization: | National Centers for Environmental Information - Silver Spring, Maryland |
---|---|
City: | Silver Spring |
State/Province: | MD |
Entity Information
Entity Type: | Spreadsheet |
---|---|
Description: |
The database contains a summary of bacteria which have been isolated in sea turtles dead and alive at the NOAA Galveston Laboratory and is based on reports received from the Texas Veterinary Diagnosic Laboratory in College Station, Texas. |
Data Attributes
Attribute Summary
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![]() |
Name | Type | Description |
---|---|---|---|---|
100
|
Turtle_ID | CHARACTER | NOAA sea turtle identification code made up from the abbreviated genus species for loggerhead [Cc] followed by the year-class, then the consecutive turtle number in that year class to receive medical treatment | |
100
|
Accession_Number | CHARACTER | A sample number issued by the laboratory analyzing the sample | |
100
|
Date_ of_ Death_or_Sample | Date | Date sample was taken | |
100
|
Sample_Location | CHARACTER | Location on sea turtle that was swabbed and produced the sample to be analyzed | |
100
|
Acinetobacter_sp. | NUMERIC | a genus of Gram-negative bacteria belonging to the wider class of Gammaproteobacteria | |
100
|
Aeromonas_sp. | NUMERIC | is a genus of Gram-negative, facultative anaerobic, rod-shaped bacteria that morphologically resembles members of the family Enterobacteriaceae | |
100
|
Aeromonas_hydrophila | NUMERIC | a heterotrophic, Gram-negative, rod-shaped bacterium mainly found in areas with a warm climate | |
100
|
Aeromonas_sobria | NUMERIC | a genus of Gram-negative, facultative anaerobic, rod-shaped bacteria that morphologically resembles members of the family Enterobacteriaceae | |
100
|
Alcaligenes_faecalis | NUMERIC | a species of Gram-negative, rod-shaped bacteria commonly found in the environment. | |
100
|
Alcaligenes_xylosoxidans | NUMERIC | Achromobacter xylosoxidans (formerly Alcaligenes xylosoxidans) is a Gram-negative, aerobic, oxidase- and catalase-positive, motile bacterium with peritrichous flagella, from the genus Achromobacter. It is generally found in wet environments | |
100
|
Bacillus_sp. | NUMERIC | a genus of gram-positive, rod-shaped bacteria and a member of the phylum Firmicutes. Bacillus species can be obligate aerobes (oxygen reliant), or facultative anaerobes (having the ability to be aerobic or anaerobic) | |
100
|
Bacillus_cereus | NUMERIC | a Gram-positive, rod-shaped, aerobic, motile, beta hemolytic bacterium commonly found in soil and food | |
100
|
Burkholderia_cepacia | NUMERIC | is an opportunistic human pathogen that most often causes pneumonia in immunocompromised individuals with underlying lung disease | |
100
|
Chromobacterium_violaceum | NUMERIC | a Gram-negative, facultative anaerobic, non-sporing coccobacillus. It is motile with the help of a single flagellum which is located at the pole of the coccobacillus. It is part of the normal flora of water and soil of tropical and sub-tropical regions of the world | |
100
|
Citrobacter_sp. | NUMERIC | a genus of Gram-negative coliform bacteria in the Enterobacteriaceae family | |
100
|
Citrobacter_freundii | NUMERIC | a species of facultative, anaerobic Gram-negative bacilli of the Enterobacteriaceae family.The bacteria are long bacterial rods C. freundii is a soil organism, but can also be found in water, sewage, food and in the intestinal tracts of animals and humans. | |
100
|
Clostridium_sp. | NUMERIC | a genus of Gram-positive bacteria, which includes several significant human pathogens, most notably the causative agent of botulism. Clostridium species inhabit soils and the intestinal tract of animals, including humans | |
100
|
Corynebacterium_sp. | NUMERIC | a genus of bacteria that are gram-positive and aerobic. They are bacilli (rod-shaped), and in some phases of life they are, more particularly, club-shaped | |
100
|
Enterics | NUMERIC | bacteria are bacteria of the intestines, and may refer to: Gut flora, which are always present and usually harmless. Pathogenic bacteria of bacterial gastroenteritis. The taxonomic family Enterobacteriaceae | |
100
|
Enterobacter_sp. | NUMERIC | a genus of common Gram-negative, facultatively anaerobic, rod-shaped, non-spore-forming bacteria of the family Enterobacteriaceae | |
100
|
Enterococcus_sp. | NUMERIC | a large genus of lactic acid bacteria of the phylum Firmicutes. Enterococci are Gram-positive cocci that often occur in pairs (diplococci) or short chains, and are difficult to distinguish from streptococci on physical characteristics alone | |
100
|
Escherichia_coli | NUMERIC | is a gram-negative, facultatively anaerobic, rod-shaped bacterium of the genus Escherichia that is commonly found in the lower intestine of warm-blooded organisms (endotherms) | |
100
|
Fungi | NUMERIC | Fungi can be single celled or very complex multicellular organisms. They are found in just about any habitat but most live on the land, mainly in soil or on plant material rather than in sea or fresh water | |
100
|
Gram_Negative_Non_fermenter | NUMERIC | a taxonomic heterogene group of bacteria of the division Proteobacteria, which can not catabolize glucose and therefore are not able to ferment. The coccoid or bacillary bacteria can be found in soil or wet areas. | |
100
|
Gram_Negative_Rod | NUMERIC | a group of bacteria that do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation | |
100
|
Gram_Positive_Rod | NUMERIC | are a bacteria that give a positive result in the Gram stain test | |
100
|
Gram_Negative_pleomorphic_Rod | NUMERIC | a group of bacteria that can cause respiratory problems | |
100
|
Klebsiella_pneumoniae | NUMERIC | a Gram-negative, nonmotile, encapsulated, lactose-fermenting, facultative anaerobic, rod-shaped bacterium | |
100
|
Klebsiella_oxytoca | NUMERIC | a Gram-negative, rod-shaped bacterium that is closely related to K. pneumoniae | |
100
|
Listonella_anguillarum | NUMERIC | a Gram-negative marine bacterium in the family Vibrionaceae. The correct name nowadays is Vibrio anguillarum | |
100
|
Mixed_anaerobes | NUMERIC | are bacteria do not grow on solid media in room air. Anaerobic bacteria are a common cause of infections, some of which can be serious and life-threatening | |
100
|
Mixed_Bacterial_Growth | NUMERIC | Bacteria are present but cannot be identified to species | |
100
|
Moraxella_sp. | NUMERIC | a genus of Gram-negative bacteria in the Moraxellaceae family and often associated with respiratory disease. | |
100
|
Moraxella_osloensis | NUMERIC | a species of Gram-negative oxidase positive, aerobic bacteria within the family Moraxellaceae. | |
100
|
Morganella_sp. | NUMERIC | a species of gram-negative bacteria. | |
100
|
Morganella_morganii | NUMERIC | a species of gram-negative bacteria. It has a commensal relationship within the intestinal tracts of humans, mammals, and reptiles as normal flora | |
100
|
Mycobacterium_sp._(Rapidly-Growing) | NUMERIC | The genus includes pathogens known to cause serious diseases in mammals, including tuberculosis. Mycobacteria have been observed to grow in a mold-like fashion on the surface of cultures. | |
100
|
Negative_Culture_Anaerobes | NUMERIC | No anaerobic bacteria were present | |
100
|
Negative_Culture_Salmonella | NUMERIC | Salmonella bacteria was not present | |
100
|
Nocardia_sp. | NUMERIC | a genus of weakly staining Gram-positive, catalase-positive, rod-shaped bacteria. Nocardia species are found worldwide in soil rich in organic matter. | |
100
|
Ochrobactrum_sp. | NUMERIC | a bacterial genus that belongs to Brucellaceae in the Rhizobiales | |
100
|
Pantoea_sp. | NUMERIC | a genus of Gram-negative bacteria of the family Enterobacteriaceae, recently separated from the Enterobacter genus | |
100
|
Pasteurella_sp. | NUMERIC | a genus of Gram-negative, facultatively anaerobic bacteria. Many Pasteurella species are zoonotic pathogens, and humans can acquire an infection from domestic animal bites | |
100
|
Penicillium_sp. | NUMERIC | a genus of ascomycetous fungi of major importance in the natural environment as well as food and drug production | |
100
|
Photobacterium_damselae | NUMERIC | a gram-negative rod-shaped bacterium that causes disease in fish. | |
100
|
Providencia_sp. | NUMERIC | a Gram negative, motile bacterium of the family Enterobacteriaceae and can cause urinary tract infections | |
100
|
Proteus_sp. | NUMERIC | Proteus bacilli are widely distributed in nature as saprophytes, being found in decomposing animal matter, sewage, manure soil, and human and animal feces. They are opportunistic pathogens, commonly responsible for urinary and septic infections. | |
100
|
Proteus_mirabilis | NUMERIC | a Gram-negative, facultatively anaerobic, rod-shaped bacterium. It shows swarming motility and urease activity. It is widely distributed in soil and water. | |
100
|
Proteus_vulgaris | NUMERIC | a rod-shaped, nitrate-reducing, indole+ and catalase-positive, hydrogen sulfide-producing, Gram-negative bacterium that inhabits the intestinal tracts of humans and animals. It can be found in soil, water, and fecal matter. | |
100
|
Pseudomonas_sp. | NUMERIC | a genus of Gram-negative, aerobic Gammaproteobacteria, belonging to the family Pseudomonadaceae | |
100
|
Pseudomonas_aeruginosa | NUMERIC | a common Gram-negative, rod-shaped bacterium that can cause disease in plants and animals, including humans | |
100
|
Pseudomonas_pseudoalcaligenes | NUMERIC | an aerobic, Gram-negative soil bacterium. | |
100
|
Pseudomonas_putida | NUMERIC | a Gram-negative, rod-shaped, saprotrophic soil bacterium | |
100
|
Rhodococcus_equi | NUMERIC | a Gram-positive coccobacillus bacterium. The organism is commonly found in dry and dusty soil | |
100
|
Salmonella_sp. | NUMERIC | a genus of rod-shaped (bacillus) gram-negative bacterium of the Enterobacteriaceae family. The two species of Salmonella are Salmonella enterica and Salmonella bongori. S. enterica subspecies are found worldwide in all warm-blooded animals, and in the environment. S. bongori is restricted to cold-blooded animals particularly reptiles. Strains of Salmonella cause illnesses such as typhoid fever, paratyphoid fever, and food poisoning | |
100
|
Shewanella_sp. | NUMERIC | family of marine bacteria, some species within it were formerly classed as Alteromonas. Shewanella bacteria are a normal component of the surface flora of fish and are implicated in fish spoilage. | |
100
|
Shewanella_putrefaciens | NUMERIC | a Gram-negative pleomorphic bacterium. It has been isolated from marine environments It is also one of the organisms associated with the odor of rotting fish, as it is a marine organism which produces trimethylamine | |
100
|
Sphingomonas_paucimobilis | NUMERIC | an aerobic Gram-negative soil bacillus that has a single polar flagellum with slow motility. | |
100
|
Staphylococcus_sp. | NUMERIC | a genus includes at least 40 species. Most are harmless and reside normally on the skin and mucous membranes of humans and other organisms. Found worldwide, they are a small component of soil microbial flora. | |
100
|
Streptococcus_sp. | NUMERIC | a genus of coccus (spherical) Gram-positive bacteria belonging to the phylum Firmicutes | |
100
|
Tsukamurella_sp. | NUMERIC | A genus of facultatively pathogenic actinomycetes that infect immunocompromised hosts, sites with foreign body or chronic infections | |
100
|
Vibrio_sp. | NUMERIC | a genus of Gram-negative bacteria, possessing a curved-rod shape. Several species of which can cause foodborne infection, usually associated with eating undercooked seafood. Typically found in seawater. | |
100
|
Vibrio_alginolyticus | NUMERIC | a Gram-negative marine bacterium. It is medically important since it causes wound infection | |
100
|
Vibrio_fluvialis | NUMERIC | V. fluvialis can be found in salt waters globally and also has the potential to infect both humans and a variety of crustaceans. | |
100
|
Vibrio_harveyi | NUMERIC | V. harveyi can be found free-swimming in tropical marine waters, commensally in the gut microflora of marine animals, and as both a primary and opportunistic pathogen of marine animals | |
100
|
Vibrio_parahaemolyticus | NUMERIC | a curved, rod-shaped, Gram-negative bacterium found in brackish saltwater. | |
100
|
Vibrio_vulnificus | NUMERIC | a species of Gram-negative, motile, curved, rod-shaped (bacillus), pathogenic bacteria of the genus Vibrio. Present in marine environments such as estuaries, brackish ponds, or coastal areas | |
100
|
Negative_Culture_Vibrio_sp. | NUMERIC | No Vibrio sp. were present | |
100
|
Isolated | Character | Indicates what specific bacteria was isolated | |
100
|
Sensitivity_Test_Y_or_N | CHARACTER | Sensitivity tests expose the bacteria to antibacterial agents to determine which would be most effective at killing the bacteria. (Y)es or (N)o response | |
100
|
Cause_of_Death_or_Ilness_Identified | CHARACTER | If the cause of death was positively determined by necropsy, histology, or bacteriology the results are diagnosis is listed here | |
100
|
Cause_of_Death_or_Illness_Bacteria_Related _Y_or_N | CHARACTER | If the diagnosis indicated that bacterial infection was the primary cause of death, it is noted here |
Attribute Details
Turtle_ID
Seq. Order: | 1 |
---|---|
Data Storage Type: | CHARACTER |
Max Length: | 10 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
NOAA sea turtle identification code made up from the abbreviated genus species for loggerhead [Cc] followed by the year-class, then the consecutive turtle number in that year class to receive medical treatment |
Accession_Number
Seq. Order: | 2 |
---|---|
Data Storage Type: | CHARACTER |
Max Length: | 10 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
A sample number issued by the laboratory analyzing the sample |
Date_ of_ Death_or_Sample
Seq. Order: | 3 |
---|---|
Data Storage Type: | Date |
Max Length: | 10 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Date sample was taken |
Format Mask: | MM/DD/YYYY |
Sample_Location
Seq. Order: | 4 |
---|---|
Data Storage Type: | CHARACTER |
Max Length: | 20 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Location on sea turtle that was swabbed and produced the sample to be analyzed |
Acinetobacter_sp.
Seq. Order: | 5 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of Gram-negative bacteria belonging to the wider class of Gammaproteobacteria |
Aeromonas_sp.
Seq. Order: | 6 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
is a genus of Gram-negative, facultative anaerobic, rod-shaped bacteria that morphologically resembles members of the family Enterobacteriaceae |
Aeromonas_hydrophila
Seq. Order: | 7 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a heterotrophic, Gram-negative, rod-shaped bacterium mainly found in areas with a warm climate |
Aeromonas_sobria
Seq. Order: | 8 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of Gram-negative, facultative anaerobic, rod-shaped bacteria that morphologically resembles members of the family Enterobacteriaceae |
Alcaligenes_faecalis
Seq. Order: | 9 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a species of Gram-negative, rod-shaped bacteria commonly found in the environment. |
Alcaligenes_xylosoxidans
Seq. Order: | 10 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Achromobacter xylosoxidans (formerly Alcaligenes xylosoxidans) is a Gram-negative, aerobic, oxidase- and catalase-positive, motile bacterium with peritrichous flagella, from the genus Achromobacter. It is generally found in wet environments |
Bacillus_sp.
Seq. Order: | 11 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of gram-positive, rod-shaped bacteria and a member of the phylum Firmicutes. Bacillus species can be obligate aerobes (oxygen reliant), or facultative anaerobes (having the ability to be aerobic or anaerobic) |
Bacillus_cereus
Seq. Order: | 12 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a Gram-positive, rod-shaped, aerobic, motile, beta hemolytic bacterium commonly found in soil and food |
Burkholderia_cepacia
Seq. Order: | 13 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
is an opportunistic human pathogen that most often causes pneumonia in immunocompromised individuals with underlying lung disease |
Chromobacterium_violaceum
Seq. Order: | 14 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a Gram-negative, facultative anaerobic, non-sporing coccobacillus. It is motile with the help of a single flagellum which is located at the pole of the coccobacillus. It is part of the normal flora of water and soil of tropical and sub-tropical regions of the world |
Citrobacter_sp.
Seq. Order: | 15 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of Gram-negative coliform bacteria in the Enterobacteriaceae family |
Citrobacter_freundii
Seq. Order: | 16 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a species of facultative, anaerobic Gram-negative bacilli of the Enterobacteriaceae family.The bacteria are long bacterial rods C. freundii is a soil organism, but can also be found in water, sewage, food and in the intestinal tracts of animals and humans. |
Clostridium_sp.
Seq. Order: | 17 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of Gram-positive bacteria, which includes several significant human pathogens, most notably the causative agent of botulism. Clostridium species inhabit soils and the intestinal tract of animals, including humans |
Corynebacterium_sp.
Seq. Order: | 18 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of bacteria that are gram-positive and aerobic. They are bacilli (rod-shaped), and in some phases of life they are, more particularly, club-shaped |
Enterics
Seq. Order: | 19 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
bacteria are bacteria of the intestines, and may refer to: Gut flora, which are always present and usually harmless. Pathogenic bacteria of bacterial gastroenteritis. The taxonomic family Enterobacteriaceae |
Enterobacter_sp.
Seq. Order: | 20 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of common Gram-negative, facultatively anaerobic, rod-shaped, non-spore-forming bacteria of the family Enterobacteriaceae |
Enterococcus_sp.
Seq. Order: | 21 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a large genus of lactic acid bacteria of the phylum Firmicutes. Enterococci are Gram-positive cocci that often occur in pairs (diplococci) or short chains, and are difficult to distinguish from streptococci on physical characteristics alone |
Escherichia_coli
Seq. Order: | 22 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
is a gram-negative, facultatively anaerobic, rod-shaped bacterium of the genus Escherichia that is commonly found in the lower intestine of warm-blooded organisms (endotherms) |
Fungi
Seq. Order: | 23 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Fungi can be single celled or very complex multicellular organisms. They are found in just about any habitat but most live on the land, mainly in soil or on plant material rather than in sea or fresh water |
Gram_Negative_Non_fermenter
Seq. Order: | 24 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a taxonomic heterogene group of bacteria of the division Proteobacteria, which can not catabolize glucose and therefore are not able to ferment. The coccoid or bacillary bacteria can be found in soil or wet areas. |
Gram_Negative_Rod
Seq. Order: | 25 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a group of bacteria that do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation |
Gram_Positive_Rod
Seq. Order: | 26 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
are a bacteria that give a positive result in the Gram stain test |
Gram_Negative_pleomorphic_Rod
Seq. Order: | 27 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a group of bacteria that can cause respiratory problems |
Klebsiella_pneumoniae
Seq. Order: | 28 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a Gram-negative, nonmotile, encapsulated, lactose-fermenting, facultative anaerobic, rod-shaped bacterium |
Klebsiella_oxytoca
Seq. Order: | 29 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a Gram-negative, rod-shaped bacterium that is closely related to K. pneumoniae |
Listonella_anguillarum
Seq. Order: | 30 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a Gram-negative marine bacterium in the family Vibrionaceae. The correct name nowadays is Vibrio anguillarum |
Mixed_anaerobes
Seq. Order: | 31 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
are bacteria do not grow on solid media in room air. Anaerobic bacteria are a common cause of infections, some of which can be serious and life-threatening |
Mixed_Bacterial_Growth
Seq. Order: | 32 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Bacteria are present but cannot be identified to species |
Moraxella_sp.
Seq. Order: | 33 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of Gram-negative bacteria in the Moraxellaceae family and often associated with respiratory disease. |
Moraxella_osloensis
Seq. Order: | 34 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a species of Gram-negative oxidase positive, aerobic bacteria within the family Moraxellaceae. |
Morganella_sp.
Seq. Order: | 35 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a species of gram-negative bacteria. |
Morganella_morganii
Seq. Order: | 36 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a species of gram-negative bacteria. It has a commensal relationship within the intestinal tracts of humans, mammals, and reptiles as normal flora |
Mycobacterium_sp._(Rapidly-Growing)
Seq. Order: | 37 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
The genus includes pathogens known to cause serious diseases in mammals, including tuberculosis. Mycobacteria have been observed to grow in a mold-like fashion on the surface of cultures. |
Negative_Culture_Anaerobes
Seq. Order: | 38 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
No anaerobic bacteria were present |
Negative_Culture_Salmonella
Seq. Order: | 39 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Salmonella bacteria was not present |
Nocardia_sp.
Seq. Order: | 40 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of weakly staining Gram-positive, catalase-positive, rod-shaped bacteria. Nocardia species are found worldwide in soil rich in organic matter. |
Ochrobactrum_sp.
Seq. Order: | 41 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a bacterial genus that belongs to Brucellaceae in the Rhizobiales |
Pantoea_sp.
Seq. Order: | 42 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of Gram-negative bacteria of the family Enterobacteriaceae, recently separated from the Enterobacter genus |
Pasteurella_sp.
Seq. Order: | 43 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of Gram-negative, facultatively anaerobic bacteria. Many Pasteurella species are zoonotic pathogens, and humans can acquire an infection from domestic animal bites |
Penicillium_sp.
Seq. Order: | 44 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of ascomycetous fungi of major importance in the natural environment as well as food and drug production |
Photobacterium_damselae
Seq. Order: | 45 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a gram-negative rod-shaped bacterium that causes disease in fish. |
Providencia_sp.
Seq. Order: | 46 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a Gram negative, motile bacterium of the family Enterobacteriaceae and can cause urinary tract infections |
Proteus_sp.
Seq. Order: | 47 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Proteus bacilli are widely distributed in nature as saprophytes, being found in decomposing animal matter, sewage, manure soil, and human and animal feces. They are opportunistic pathogens, commonly responsible for urinary and septic infections. |
Proteus_mirabilis
Seq. Order: | 48 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a Gram-negative, facultatively anaerobic, rod-shaped bacterium. It shows swarming motility and urease activity. It is widely distributed in soil and water. |
Proteus_vulgaris
Seq. Order: | 49 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a rod-shaped, nitrate-reducing, indole+ and catalase-positive, hydrogen sulfide-producing, Gram-negative bacterium that inhabits the intestinal tracts of humans and animals. It can be found in soil, water, and fecal matter. |
Pseudomonas_sp.
Seq. Order: | 50 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of Gram-negative, aerobic Gammaproteobacteria, belonging to the family Pseudomonadaceae |
Pseudomonas_aeruginosa
Seq. Order: | 51 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a common Gram-negative, rod-shaped bacterium that can cause disease in plants and animals, including humans |
Pseudomonas_pseudoalcaligenes
Seq. Order: | 52 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
an aerobic, Gram-negative soil bacterium. |
Pseudomonas_putida
Seq. Order: | 53 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a Gram-negative, rod-shaped, saprotrophic soil bacterium |
Rhodococcus_equi
Seq. Order: | 54 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a Gram-positive coccobacillus bacterium. The organism is commonly found in dry and dusty soil |
Salmonella_sp.
Seq. Order: | 55 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of rod-shaped (bacillus) gram-negative bacterium of the Enterobacteriaceae family. The two species of Salmonella are Salmonella enterica and Salmonella bongori. S. enterica subspecies are found worldwide in all warm-blooded animals, and in the environment. S. bongori is restricted to cold-blooded animals particularly reptiles. Strains of Salmonella cause illnesses such as typhoid fever, paratyphoid fever, and food poisoning |
Shewanella_sp.
Seq. Order: | 56 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
family of marine bacteria, some species within it were formerly classed as Alteromonas. Shewanella bacteria are a normal component of the surface flora of fish and are implicated in fish spoilage. |
Shewanella_putrefaciens
Seq. Order: | 57 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a Gram-negative pleomorphic bacterium. It has been isolated from marine environments It is also one of the organisms associated with the odor of rotting fish, as it is a marine organism which produces trimethylamine |
Sphingomonas_paucimobilis
Seq. Order: | 58 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
an aerobic Gram-negative soil bacillus that has a single polar flagellum with slow motility. |
Staphylococcus_sp.
Seq. Order: | 59 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus includes at least 40 species. Most are harmless and reside normally on the skin and mucous membranes of humans and other organisms. Found worldwide, they are a small component of soil microbial flora. |
Streptococcus_sp.
Seq. Order: | 60 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of coccus (spherical) Gram-positive bacteria belonging to the phylum Firmicutes |
Tsukamurella_sp.
Seq. Order: | 61 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
A genus of facultatively pathogenic actinomycetes that infect immunocompromised hosts, sites with foreign body or chronic infections |
Vibrio_sp.
Seq. Order: | 62 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a genus of Gram-negative bacteria, possessing a curved-rod shape. Several species of which can cause foodborne infection, usually associated with eating undercooked seafood. Typically found in seawater. |
Vibrio_alginolyticus
Seq. Order: | 63 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a Gram-negative marine bacterium. It is medically important since it causes wound infection |
Vibrio_fluvialis
Seq. Order: | 64 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
V. fluvialis can be found in salt waters globally and also has the potential to infect both humans and a variety of crustaceans. |
Vibrio_harveyi
Seq. Order: | 65 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
V. harveyi can be found free-swimming in tropical marine waters, commensally in the gut microflora of marine animals, and as both a primary and opportunistic pathogen of marine animals |
Vibrio_parahaemolyticus
Seq. Order: | 66 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a curved, rod-shaped, Gram-negative bacterium found in brackish saltwater. |
Vibrio_vulnificus
Seq. Order: | 67 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
a species of Gram-negative, motile, curved, rod-shaped (bacillus), pathogenic bacteria of the genus Vibrio. Present in marine environments such as estuaries, brackish ponds, or coastal areas |
Negative_Culture_Vibrio_sp.
Seq. Order: | 68 |
---|---|
Data Storage Type: | NUMERIC |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
No Vibrio sp. were present |
Isolated
Seq. Order: | 69 |
---|---|
Data Storage Type: | Character |
Max Length: | 50 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Indicates what specific bacteria was isolated |
Sensitivity_Test_Y_or_N
Seq. Order: | 70 |
---|---|
Data Storage Type: | CHARACTER |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Sensitivity tests expose the bacteria to antibacterial agents to determine which would be most effective at killing the bacteria. (Y)es or (N)o response |
Allowed Values: | Y N |
Cause_of_Death_or_Ilness_Identified
Seq. Order: | 71 |
---|---|
Data Storage Type: | CHARACTER |
Max Length: | 200 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
If the cause of death was positively determined by necropsy, histology, or bacteriology the results are diagnosis is listed here |
Cause_of_Death_or_Illness_Bacteria_Related _Y_or_N
Seq. Order: | 72 |
---|---|
Data Storage Type: | CHARACTER |
Max Length: | 1 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
If the diagnosis indicated that bacterial infection was the primary cause of death, it is noted here |
Allowed Values: | Y N |
Support Roles
Data Steward
Date Effective From: | 2002 |
---|---|
Date Effective To: | |
Contact (Person): | Higgins, Benjamin |
Address: |
4700 Avenue U Galveston, TX 77551 |
Email Address: | ben.higgins@noaa.gov |
Phone: | 409-766-3670 |
Contact Instructions: |
Phone or email |
Distributor
Date Effective From: | 2017 |
---|---|
Date Effective To: | |
Contact (Organization): | NOAA National Centers for Environmental Information (NCEI) |
Email Address: | ncei.info@noaa.gov |
URL: | NCEI Contact Information |
Contact Instructions: |
Phone or email |
Metadata Contact
Date Effective From: | 2002 |
---|---|
Date Effective To: | |
Contact (Person): | Higgins, Benjamin |
Address: |
4700 Avenue U Galveston, TX 77551 |
Email Address: | ben.higgins@noaa.gov |
Phone: | 409-766-3670 |
Contact Instructions: |
Contact by email preferred. |
Point of Contact
Date Effective From: | 2016 |
---|---|
Date Effective To: | |
Contact (Person): | Baumer, Tim J |
Address: |
4700 Avenue U Galveston, TX 77551 |
Email Address: | tim.baumer@noaa.gov |
Phone: | 409-766-3784 |
Contact Instructions: |
Contact by email preferred. |
Distribution Information
Distribution 1
Start Date: | 2017 |
---|---|
End Date: | Present |
Download URL: | https://www.ncei.noaa.gov/archive/accession/0157625/2.2/data/0-data/Galveston_Turtle_Program/26903/CSV/Renamed_Data_Table.csv |
Distributor: | NOAA National Centers for Environmental Information (NCEI) (2017 - Present) |
File Name: | Rename_Data_Table.csv |
File Date/Time: | 2016-12-14 11:10:00 |
File Type (Deprecated): | tabular digital data (Microsoft Excel, CSV, or other tabular format) |
Distribution Format: | CSV - Comma Separated Values (Text) |
File Size: | 41K |
Compression: | Uncompressed |
Catalog Details
Catalog Item ID: | 50698 |
---|---|
GUID: | gov.noaa.nmfs.inport:50698 |
Metadata Record Created By: | Lee M Weinberger |
Metadata Record Created: | 2017-12-07 14:45+0000 |
Metadata Record Last Modified By: | SysAdmin InPortAdmin |
Metadata Record Last Modified: | 2024-10-03 18:16+0000 |
Metadata Record Published: | 2021-04-29 |
Owner Org: | SEFSC |
Metadata Publication Status: | Published Externally |
Do Not Publish?: | N |
Metadata Last Review Date: | 2021-04-29 |
Metadata Review Frequency: | 1 Year |
Metadata Next Review Date: | 2022-04-29 |