Data Management Plan
GUID: gov.noaa.nmfs.inport:54926 | Published / External
Data Management Plan
DMP Template v2.0.1 (2015-01-01)Please provide the following information, and submit to the NOAA DM Plan Repository.
Reference to Master DM Plan (if applicable)
As stated in Section IV, Requirement 1.3, DM Plans may be hierarchical. If this DM Plan inherits provisions from a higher-level DM Plan already submitted to the Repository, then this more-specific Plan only needs to provide information that differs from what was provided in the Master DM Plan.
1. General Description of Data to be Managed
The ocean acidification diel suite is an autonomous instrument package that measures diel variability in coral reef seawater carbonate chemistry. Diel suite surveys are conducted by the NOAA Pacific Islands Fisheries Science Center (PIFSC), Ecosystem Sciences Division (ESD) within coral reef ecosystems across the Pacific Islands Region as part of the NOAA National Coral Reef Monitoring Program (NCRMP). The data provided in this data set are from diel suites deployed during ESD-led missions at select sites in the Pacific Remote Island Areas. Diel surveys were conducted during NCRMP missions aboard NOAA Ship Hi'ialakai at Jarvis Island, Kingman Reef, and Palmyra Atoll from April 11-28, 2015 and again at Jarvis from April 2-6, 2017. Diel surveys were also conducted at Jarvis in collaboration with Anne Cohen’s lab at Woods Hole Oceanographic Institution during a special post-bleaching mission aboard NOAA Ship Oscar Elton Sette from May 16-23, 2016. The most recent diel surveys were conducted on the ESD-led cruise HA1801 at Baker Island, Jarvis Island, and Palmyra Atoll between June 12th-August 7th, 2018.
Diel suites were deployed on the reef for at least 24 hours to measure in-situ salinity, dissolved oxygen, temperature, pressure, pH, and current direction and magnitude. Seawater samples were also collected for laboratory analyses of dissolved inorganic carbon (DIC) and total alkalinity (TA). Components of the carbonate system--including pH, pCO2 (partial pressure of carbon dioxide), and aragonite saturation state--are calculated from DIC, TA, temperature, salinity and pressure. Each diel suite typically consisted of: 1 SBE-19plus CTD sensor, an oxygen sensor, 1 Nortek Acoustic Doppler Current Profiler (ADCP), 1 Satlantic SeaFET Ocean pH sensor, and up to 9 Programmable Underwater Collectors (PUCs), each of which collected 1 water sample at 4-hour intervals. Instruments deployed, samples collected, and sample intervals are recorded in the summary file enclosed with the data package, and exceptions to the standard diel suite are also noted.
Notes: Only a maximum of 4000 characters will be included.
Notes: Data collection is considered ongoing if a time frame of type "Continuous" exists.
Notes: All time frames from all extent groups are included.
Extent of diel surveys at Jarvis Island, Palmyra Atoll, and Kingman Reef of the Pacific Remote Island Areas during the ASRAMP cruise (HA1501) in 2015W: -160.0082, E: -159.9789, N: -0.3678, S: -0.369
Extent of diel surveys at Jarvis Island of the Pacific Remote Island Areas during the 2016 post-coral bleaching mission (SE1602) and MARAMP 2017 (HA1701).W: -176.4887, E: -160.008, N: 5.8664, S: -0.3689
Extent of diel surveys at Jarvis Island, Palmyra Atoll, and Baker Island of the Pacific Remote Island Areas during the ASRAMP 2018 cruise (HA1801).
Notes: All geographic areas from all extent groups are included.
(e.g., digital numeric data, imagery, photographs, video, audio, database, tabular data, etc.)
(e.g., satellite, airplane, unmanned aerial system, radar, weather station, moored buoy, research vessel, autonomous underwater vehicle, animal tagging, manual surveys, enforcement activities, numerical model, etc.)
Platform(s): Diel Suite
2. Point of Contact for this Data Management Plan (author or maintainer)
Notes: The name of the Person of the most recent Support Role of type "Metadata Contact" is used. The support role must be in effect.
Notes: The name of the Organization of the most recent Support Role of type "Metadata Contact" is used. This field is required if applicable.
3. Responsible Party for Data Management
Program Managers, or their designee, shall be responsible for assuring the proper management of the data produced by their Program. Please indicate the responsible party below.
Notes: The name of the Person of the most recent Support Role of type "Data Steward" is used. The support role must be in effect.
Programs must identify resources within their own budget for managing the data they produce.
5. Data Lineage and Quality
NOAA has issued Information Quality Guidelines for ensuring and maximizing the quality, objectivity, utility, and integrity of information which it disseminates.
(describe or provide URL of description):
The ocean acidification diel suite is a collection of instruments deployed by SCUBA divers onto the seafloor that makes autonomous measurements and collects seawater samples. For a typical deployment, the diel suite consists of: 1 Sea Bird Electronics (SBE)-19plus CTD, 1 Nortek Acoustic Doppler Current Profiler (ADCP), 1 Satlantic SeaFET Ocean pH sensor, and up to 9 Programmable Underwater Collectors (PUCs), where each PUC collects 1 water sample at a 4-hour interval over a minimum 24-hour period. Starting 2018, an SBE-43 oxygen sensor is co-located with the SBE-19plus CTD. All instruments are weighted or zip-tied to rubble on the seafloor, or both, to secure the position of the instrumentation for the duration of the deployment.
- Water samples collected with Programmable Underwater Collectors (PUC) Developed by Dr. Chris Langdon's laboratory at the University of Miami, PUCs are computerized timers attached to a low-power peristaltic pump. An array of PUCs collects water samples at 4-hour intervals over the course of at least 24-hours, usually starting at 12:00 pm local time on day 1 and ending at 12:00 pm on day 2. While PUCs are programmed to collect water on this regular sampling schedule, issues with the pumps can occasionally result in missing samples for some of the time steps. For some deployments, paired water samples were collected simultaneously at the benthos and 1.5 meters above the seafloor. Samples are collected underwater in tedlar bags pre-poisoned with mercuric chloride and transferred to glass bottles within a few hours of recovery. Water samples are analyzed for DIC using a coulometer (SOP #2) and for TA using a titrator (SPO #3b) by the NOAA Pacific Marine Environmental Laboratory. On occasion, poor pump performance results in half-filled sample bags. These samples are only analyzed for TA due to insufficient sample volume for DIC analysis. Full carbon system chemistry values (including pH, pCO2, and aragonite saturation state) are derived from DIC/TA and salinity/temperature/pressure data from a co-deployed CTD using the R package seacarb. Discrete sample pH data are compared to SeaFET pH data. (Citation: Dickson, A.G., Sabine, C.L. and Christian, J.R. (Eds.) 2007. Guide to best practices for ocean CO2 measurements. PICES Special Publication 3, 191 pp.)
- Acoustic Doppler Current Profiler (ADCP) sensor The diel suite includes either a 1.0 MHz or a 2.0 MHz side-looking ADCP (1.0 MHz ranges 20-m depth, while the 2.0 MHz ranges 10-m). ADCP measurements are collected at 2- or 10-minute intervals and binned by height above the sensor. Each height bin is represented in the data set as the upper limit of the bin height above the sensor on the seafloor (for example, a 1.4 m bin represents current data collected between 0.4 m and 1.4 m above the ADCP). ADCP data include a blanking region, or a small distance in front of the transducer in which measurements cannot be made, of 0.2-0.4 m. Current data are typically grouped into 1-m height bins, but smaller bin sizes (0.25 - 0.5m) are used for shallower deployments. Raw data downloaded from the ADCP are processed in R using the oce package. XYZ coordinate data are converted to ENU (east-north-up) coordinate system. Current speed is calculated as the square root of the sum of the squared u and v velocities and direction as the arctan(v/u). Data are trimmed to a maximum height bin for each time step using pressure data to remove above-water signal. As a result, NULL values may exist for larger height bins above the surface of the water due to waves and tides.
- Conductivity-Temperature-Depth (CTD) sensor CTD data are collected by a Sea Bird Electronics 19plus v2 SeaCAT at varying intervals, depending on the year and survey (every 10 sec, 20 sec, 1 min, or 5 min). Data are uploaded as HEX files, converted to CNV using SBE Data Processing Software, and converted to CSV using the 'oce' package in R.
- SeaFET pH sensor The SeaFET pH measures in-situ pH using a solid state ISFET sensor with an AgCl external reference electrode. The electrode is conditioned in running seawater up to a week prior to deployment and stored in artificial seawater between deployments. pH data are collected in bursts of 30 measurements every 2 or 5 minutes. The SeaFET is co-deployed with a CTD, and temperature and salinity values from the CTD time series are used to correct the raw pH time series. The SeaFET derives pH from both internal and external potentiometric cells, but only external pH is reported. SeaFET pH values are compared to pH values calculated from discrete TA and DIC samples collected at the same time and location.
- Oxygen sensor From 2018, an SBE-43 oxygen sensor is co-located with the SBE-19plus CTD to measure in-situ dissolved oxygen data.
(describe or provide URL of description):
The data is quality controlled by NOAA PIFSC Ecosystem Sciences Division (ESD) personnel after the data is downloaded from the instruments, after it is migrated to the database, and once again when the data are submitted to the NOAA National Centers for Environmental Information.
NOAA Pacific Marine Environmental Laboratory (PMEL) conducts quality assurance and quality control on their seawater analyses according to protocols #2 and #3b in Dickson et al (2007).
6. Data Documentation
The EDMC Data Documentation Procedural Directive requires that NOAA data be well documented, specifies the use of ISO 19115 and related standards for documentation of new data, and provides links to resources and tools for metadata creation and validation.
(describe or provide URL of description):
7. Data Access
NAO 212-15 states that access to environmental data may only be restricted when distribution is explicitly limited by law, regulation, policy (such as those applicable to personally identifiable information or protected critical infrastructure information or proprietary trade information) or by security requirements. The EDMC Data Access Procedural Directive contains specific guidance, recommends the use of open-standard, interoperable, non-proprietary web services, provides information about resources and tools to enable data access, and includes a Waiver to be submitted to justify any approach other than full, unrestricted public access.
Notes: The name of the Organization of the most recent Support Role of type "Distributor" is used. The support role must be in effect. This information is not required if an approved access waiver exists for this data.
Notes: This field is required if a Distributor has not been specified.
Notes: All URLs listed in the Distribution Info section will be included. This field is required if applicable.
Data can be accessed online via the NOAA National Centers for Environmental Information (NCEI) Ocean Archive.
Notes: This field is required if applicable.
8. Data Preservation and Protection
The NOAA Procedure for Scientific Records Appraisal and Archive Approval describes how to identify, appraise and decide what scientific records are to be preserved in a NOAA archive.
(Specify NCEI-MD, NCEI-CO, NCEI-NC, NCEI-MS, World Data Center (WDC) facility, Other, To Be Determined, Unable to Archive, or No Archiving Intended)
Notes: This field is required if archive location is World Data Center or Other.
Notes: This field is required if archive location is To Be Determined, Unable to Archive, or No Archiving Intended.
Notes: Physical Location Organization, City and State are required, or a Location Description is required.
Discuss data back-up, disaster recovery/contingency planning, and off-site data storage relevant to the data collection
The data is captured in several locations: files stored on the cruise server during the mission and the PIFSC network, and data are imported into the PIFSC Oracle database. The cruise server is regularly backed up by the cruise data manager while at sea, and the PIFSC network and Oracle database are maintained and regularly backed up by PIFSC ITS.
9. Additional Line Office or Staff Office Questions
Line and Staff Offices may extend this template by inserting additional questions in this section.