Genetic Analysis Database
Data Set (DS) | Southeast Fisheries Science Center (SEFSC)GUID: gov.noaa.nmfs.inport:26490 | Updated: August 9, 2022 | Published / External
Summary
Short Citation
Southeast Fisheries Science Center, 2024: Genetic Analysis Database, https://www.fisheries.noaa.gov/inport/item/26490.
Full Citation Examples
Samples of skin and other tissues are collected from marine mammals along the U.S. east coast by a variety of researchers. Samples may be collected from live animals through remote biopsy or live-capture, stranded animals, or animals captured incidentally during fishery operations. DNA is extracted from these samples, sequenced, and analyzed using a variety of methods to support phylogenetic studies, stock delineation studies, and a variety of other analyses related to cetacean genetics in U.S. waters. These data sets include the sequence and other genetic data collected from these samples along with analytical results. These data contribute to delineation of stocks described in annual Marine Mammal Protection Act stock assessment reports.
Distribution Information
No Distributions available.
Access Constraints:Waiver Needed
Child Items
No Child Items for this record.
Contact Information
Point of Contact
Lance Garrison
Lance.Garrison@noaa.gov
305-361-4488
Metadata Contact
Patricia Rosel
patricia.rosel@noaa.gov
337-291-2123
Extents
-98.1° W,
-65.5° E,
44.7° N,
17.5° S
Gulf Of Mexico, Caribbean Sea, And U.S. Atlantic Ocean
1999 - Present
Item Identification
Title: | Genetic Analysis Database |
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Status: | In Work |
Abstract: |
Samples of skin and other tissues are collected from marine mammals along the U.S. east coast by a variety of researchers. Samples may be collected from live animals through remote biopsy or live-capture, stranded animals, or animals captured incidentally during fishery operations. DNA is extracted from these samples, sequenced, and analyzed using a variety of methods to support phylogenetic studies, stock delineation studies, and a variety of other analyses related to cetacean genetics in U.S. waters. These data sets include the sequence and other genetic data collected from these samples along with analytical results. These data contribute to delineation of stocks described in annual Marine Mammal Protection Act stock assessment reports. |
Purpose: |
To study genetic relationships and phylogeny of ceteceans. |
Notes: |
Databases of genetic data collected from marine mammal tissue samples including sexes, genetic sequence data, microsattellite markers, sNPs, etc. Collected data are in a variety of formats with variable levels of QA/QC depending upon the project status. |
Physical Location
Organization: | Southeast Fisheries Science Center |
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City: | Miami |
State/Province: | FL |
Country: | USA |
Location Description: |
Location Of The Main Office Of The South East Fisheries Science Center |
Data Set Information
Data Set Scope Code: | Data Set |
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Data Presentation Form: | Table (digital) |
Support Roles
Data Steward
Date Effective From: | 1999 |
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Date Effective To: | |
Contact (Person): | Garrison, Lance |
Address: |
75 Virginia Beach Dr Miami, FL 33149 |
Email Address: | Lance.Garrison@noaa.gov |
Phone: | 305-361-4488 |
Fax: | 305-361-4478 |
Business Hours: | 8:00 AM - 4:30 PM EST/EDT |
Contact Instructions: |
Contact by email preferred. |
Distributor
Date Effective From: | 1999 |
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Date Effective To: | |
Contact (Organization): | Southeast Fisheries Science Center (SEFSC) |
Address: |
75 Virginia Beach Drive Miami, FL 33149 USA |
Phone: | (305)361-5761 |
URL: | https://www.fisheries.noaa.gov/about/southeast-fisheries-science-center |
Business Hours: | 8:00 a.m. - 4:30 p.m. EST |
Metadata Contact
Date Effective From: | 1999 |
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Date Effective To: | |
Contact (Person): | Rosel, Patricia |
Address: |
646 Cajundome Blvd Lafayette, LA 70506-4291 |
Email Address: | patricia.rosel@noaa.gov |
Phone: | 337-291-2123 |
Fax: | 337-291-2106 |
Contact Instructions: |
Contact by email preferred. |
Point of Contact
Date Effective From: | 1999 |
---|---|
Date Effective To: | |
Contact (Person): | Garrison, Lance |
Address: |
75 Virginia Beach Dr Miami, FL 33149 |
Email Address: | Lance.Garrison@noaa.gov |
Phone: | 305-361-4488 |
Fax: | 305-361-4478 |
Business Hours: | 8:00 AM - 4:30 PM EST/EDT |
Contact Instructions: |
Contact by email preferred. |
Extents
Extent Group 1
Extent Group 1 / Geographic Area 1
W° Bound: | -98.1 | |
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E° Bound: | -65.5 | |
N° Bound: | 44.7 | |
S° Bound: | 17.5 | |
Description |
Gulf Of Mexico, Caribbean Sea, And U.S. Atlantic Ocean |
Extent Group 1 / Time Frame 1
Time Frame Type: | Continuing |
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Start: | 1999 |
Access Information
Security Class: | Sensitive |
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Data Access Procedure: |
The data will be available from a public web server once an access methodology has been developed. |
Data Access Constraints: |
Waiver Needed |
Data Quality
Quality Control Procedures Employed: |
Intensive QA/QC procedures are employed during the processing and handling of samples to avoid cross-contamination. Individual sequences are reviewed and verified against standards to ensure data integrity and quality. QA/QC procedures may vary among projects based upon the study goals of individual contributors. |
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Data Management
Have Resources for Management of these Data Been Identified?: | No |
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Approximate Percentage of Budget for these Data Devoted to Data Management: | 0 |
Do these Data Comply with the Data Access Directive?: | No |
Is Access to the Data Limited Based on an Approved Waiver?: | No |
If Distributor (Data Hosting Service) is Needed, Please Indicate: | No |
Approximate Delay Between Data Collection and Dissemination: | 365 |
If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed: |
N/A |
Actual or Planned Long-Term Data Archive Location: | To Be Determined |
If To Be Determined, Unable to Archive, or No Archiving Intended, Explain: |
The archival process is currently under development. |
Approximate Delay Between Data Collection and Archiving: | 365 |
How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?: |
The data resides on a secure government network requiring multi-factor authentication for network access. |
Lineage
Process Steps
Process Step 1
Description: |
Tissue samples along with information about their collection are contributed by researchers. The DNA is extracted from these tissues and DNA sequence or other data are collected. The resulting data are incorporated into analyses of species identification, sex determination, or stock delineation. |
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Catalog Details
Catalog Item ID: | 26490 |
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GUID: | gov.noaa.nmfs.inport:26490 |
Metadata Record Created By: | Lee M Weinberger |
Metadata Record Created: | 2015-08-17 16:17+0000 |
Metadata Record Last Modified By: | SysAdmin InPortAdmin |
Metadata Record Last Modified: | 2022-08-09 17:11+0000 |
Metadata Record Published: | 2021-04-29 |
Owner Org: | SEFSC |
Metadata Publication Status: | Published Externally |
Do Not Publish?: | N |
Metadata Last Review Date: | 2021-04-29 |
Metadata Review Frequency: | 1 Year |
Metadata Next Review Date: | 2022-04-29 |