Skip to main content
Unsupported Browser Detected

Internet Explorer lacks support for the features of this website. For the best experience, please use a modern browser such as Chrome, Firefox, or Edge.

EcoFOCI Cruise - Post 4

June 15, 2022

EcoFOCI’s spring mooring cruise departed Dutch Harbor on May 10. This annual survey provides baseline fisheries & oceanographic data to support ongoing management of our nation's fisheries and marine life in the Bering Sea & rapidly changing U.S. Arctic.

A sonobuoy is deployed over the port rail. Credit: NOAA Fisheries

No Time to Waste: Data Collection During Transits

Blog 2 and Blog 3, we covered what the science crew accomplishes while on-station, but there’s often huge chunks of time when the ship is moving from one sampling point to another. For instance, on the first day of the survey, we had a 16-hour run from Dutch Harbor to mooring site 2, home of Peggy mooring. Likewise, on Day 5, there was a 35-hour transit from Unimak Pass to mooring site 4.

The Imaging Flow Cytobot

To collect oceanographic data while transiting, the ship’s survey and science crews monitor a suite of high-tech instruments. A new tool, tested for the first time on this survey, is an Imaging Flow Cytobot, aka. the IFCB.

A scientist points to a large cylinder next to a laptop in a wetlab with tubing and other electronic sensors. To prevent falling it is anchored with a label "Around Too - IFCB" for Imaging Flow Cytobot. Credit: NOAA Fisheries
The Imaging Flow Cytobot is housed in a long cylinder mounted in the ship’s Wet Lab. Water flows through the system where a specialized camera captures images of phytoplankton.

As the name implies, this “robot” captures images of microscopic cells (the prefix ‘cyto’ means “of a cell”) as seawater from the ship’s intake valves flows through the system. This instrument targets phytoplankton, and real-time monitoring during transits is another great way to help understand the base of the food web.

The top of the Imaging Flow Cytobot cylinder with three major tubes visible: intake, exhaust, and output. A laptop sits
The Imaging Flow Cytobot connected to a computer, displays real-time images of the phytoplankton. Credit: NOAA Fisheries

In May, we are here during the spring bloom, and as images pop up on the screen, scientists take notes to identify the presence of different phytoplankton species. However, this is purely to get a general idea. Machine learning will provide the detailed analysis of the dataset, which will end up being thousands and thousands of images from this 9-day survey.

A scientist examines the top of the Imaging Flow Cytobot cylinder. In background miscellaneous survey related items are scattered on the wet lab bench. Credit: NOAA Fisheries
Scientist monitoring incoming images with Imaging Flow Cytobot in foreground. Credit: NOAA Fisheries
A collage of examples of how various phytoplankton appear on screen when scientists use the Imaging Flow Cytobot. Credit: NOAA Fisheries
Images of phytoplankton displayed real-time on a computer screen. Credit: NOAA Fisheries

Sonobuoys - Listening For Whales

The wide-open gray and choppy Bering Sea is a very hard place to visually survey for marine mammals. But, sound travels very far in water and biologists on board can also take advantage of the transit times to listen for, and possibly find, whales, specifically the North Pacific right whale.

Two side by side images of sonobuoy deployment to demonstrate how they are ejected into the ocean by the scientist (left panel) and how long they extend and uncoil as they descend into the water (right panel). Credit: NOAA Fisheries
Deploying a sonobuoy from the NOAA Ship Oscar Dyson from two angles. Credit: NOAA Fisheries

During the many transits, the marine mammal team deployed 27 sonobuoys. These buoys have a float at the surface with underwater microphones (aka. hydrophones) hanging below that can detect sounds in real time and provide the source’s direction. The acoustic signal is transmitted back to the vessel and is recorded to computers inside the ship’s bridge. If whales are detected and the survey plan allows, the ship will turn toward the source of the audio, and more sonobuoys are deployed. With multiple sonobuoys tracking the direction of the whale calls, the location can be triangulated to find the whale.

Two scientists listen to sonographs through a ship computer to determine if a whale is nearby. Credit: NOAA Fisheries
Listening to whale calls on the ship’s bridge and the direction of the source. The range of the sonobuoy to the ship is about 15km. Credit: NOAA Fisheries
A photo of the screen scientists are analyzing to the determine the source and direction of whale sounds detected by sonobuoys. Credit: NOAA Fisheries
Analyzing direction of audio source. Credit: NOAA Fisheries

While we didn’t find any North Pacific right whales on this survey, sonobuoys have contributed greatly to our understanding of this highly endangered species. During this Spring Mooring Survey, we most often detected killer whales and sperm whales.

Click on the video below to listen to a chatty group of killer whales.

Spectrogram visualizes recordings of killer whales in the Bering Sea. This research is conducted under NMFS ESA / MMPA Permit #25563.

Wrap Up

This 9-day survey was an eye-opening experience. There is so much going on and I was continually impressed at how the sea-time was maximized. It was hard to keep track of everything!

For instance, another objective accomplished on the survey was to deploy small metal Pop-up floats (PUFs). This is another instrument moored to the bottom, but releases on its own and becomes a float, measuring temperature as it drifts. Multiple floats were deployed to better understand and monitor the cold pool, a layer of cold water along the bottom of the Bering Sea. We are learning that this cold pool is super important for some species of fish and crab, and this may give researchers insight into why some species are more impacted by climate change than others.

A small metal cylinder Pop Up Float, similar in shape to a propane tank, connected to a long rope, sits on the back deck of the Oscar Dyson prior to deployment. Credit: NOAA Fisheries
Pop-Up Float (PUF) on back deck prior to deployment. Credit: NOAA Fisheries

This EcoFOCI survey is not isolated to one survey a year. In Blog 2, we mentioned that there is a fall mooring survey too. That takes place from mid-September through early October. Between the mooring surveys, there is a BASIS survey in late summer (BASIS = Bering Arctic and Subarctic Integrated Survey). This survey continues the CTD and bongo net sampling, and adds both trawl and acoustic surveys that focus on salmon and euphausiid (krill) abundance.

The coastline of Alaska is more than 2,600 miles, which is longer than all other other U.S. states combined, and a tremendous amount of area to study. More sampling across distances = better resolution of data that can tell a cohesive story when analyzed, especially with a long-term 40+ year dataset in some regions. And that’s what EcoFOCI is all about. It provides foundational science to support other research, such as fisheries-dependent surveys, which are those that are focused on harvestable species and age classes.

EcoFOCI is a critical program that helps us understand the ocean and the resources in it that we depend on. It’s yet another of the NOAA efforts that ensures sustainability of our coastal and marine resources and provides key data to those that create weather and climate forecasts.

Thanks for checking out this blog! If you got this far, you’re likely hungry for more. If so, check out another blog that’s currently running: Winter Observing on a Commercial Longline Vessel.

Are other topics you’d like to see us share? Let us know at

Fair winds and following seas!

EcoFOCI written in the sand of the beach at Summer Bay near Dutch Harbor, on Unalaska Island, Alaska, USA. Credit: NOAA Fisheries
View from Summer Bay Near Dutch Harbor, on Unalaska Island. Credit: NOAA Fisheries
Previous: EcoFOCI Cruise - Post 3

Meet the Blogger