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Celebrating 15 Years of Surveying Protected Species in the Northwest Atlantic

March 21, 2025

This year marks the 15th anniversary of the Atlantic Marine Assessment Program for Protected Species. Scientists take to the sky and sea to collect data used to conserve several marine species in our region.

Two dolphins leap out of the water. Common dolphins. Credit: NOAA Fisheries/Michelle Klein

NOAA scientists, a student, and a teacher participating in the NOAA Teacher At Sea Program kicked off a series of surveys supporting the Atlantic Marine Assessment Program for Protected Species.

“I feel really lucky to have been involved with this program for the last 15 years. This fantastic time series has helped us provide accurate and precise abundance and trends for many of our region’s protected species, interpret their status, and provide data needed for ocean developers and other ocean users,” said Debi Palka, the program’s principal investigator and chief scientist for the shipboard surveys. “Under the Marine Mammal Protection Act and the Endangered Species Act, our mission is to recover protected marine species while allowing economic growth, recreational opportunities, and offshore marine development in our region. Our program meets those needs. Very few science organizations are able to do this kind of long-term data collection throughout the U.S. Atlantic Ocean.”

The team conducted marine mammal, sea turtle, seabird, and ecosystem surveys aboard a NOAA vessel and plane between January 6 and February 21. Their surveys ran from Massachusetts to North Carolina, inshore to the Exclusive Economic Zone. This winter survey is particularly important because there’s limited winter data on these species, especially in offshore waters.

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 A map of the southern New England and Mid-Atlantic coastline with a series of saw-tooth and parallel lines in black and red denoting proposed ship and plan tracklines for a survey.
Proposed ship and plane tracklines for the 2025 surveys. Credit: NOAA Fisheries

From the Sea

The shipboard survey aboard NOAA Ship Pisces was an ecosystem survey focused on multiple species. It collected trophic-level data on marine mammals, sea turtles, seabirds, large fish, marine plankton, and oceanographic conditions. This work was split among four teams:

  • Seabird team
  • “Big-eye” sighting team for cetaceans
  • Passive acoustics team
  • Oceanography team.

The shipboard survey ran two sets of zigzag tracks. In total, they surveyed during parts of 23 days, for about 200 hours, covering about 2,000 nautical miles.

Seabirds

The seabird team used the traditional strip transect data collection method with unaided eyes—no binoculars or other means of magnification. They observed 9,691 individual birds, including 28 species in 10 families/subfamilies, and 11 species-groups of unidentified ducks, auks, murres, puffins, gulls, and terns.

The most common birds they saw were Dovekies and Bonaparte’s gulls. Some of the most notable, rare birds were non-breeding great shearwaters, sargasso shearwaters, and two lost landbirds, yellow-rumped warblers. They also saw a single massive feeding flock of birds consisting of more than 5,000 individuals.

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Several dozen white seabirds dive into the ocean to feed.
A large flock of seabirds, mostly gannets, dive into the ocean to feed on prey fish near the surface of the water. Credit: NOAA Fisheries/Allison Black

The “big eye” team followed the traditional transect data collection methods using unaided eyes and 25x150 powered binoculars to detect marine mammals, sea turtles, and large fish that come to the surface. They observed:

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Four scientists stand on the covered upper deck of a research vessel at sea. They are wearing cold weather gear. Some are standing and looking through binoculars and cameras. Two are sitting near the railing with one pointing off towards the horizon.
The “big eye” team watches and scans the horizon for any signs of whales, dolphins, and large fish. Credit: NOAA Fisheries/Allison Black

“We were surprised to see humpback whales everywhere we surveyed—from less than 1 mile off the coasts of New Jersey and Virginia, to warm Gulf Stream waters off North Carolina, and to waters deeper than 3,000 meters off Maryland,” said Palka.

The team was able to get fairly close to a couple groups of right whales off the mouth of the Chesapeake Bay. They photographed the callosity patterns on their heads for later identification.

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Close up of a North Atlantic right whale head as it swims at the surface of the ocean.
North Atlantic right whale “Champagne” was spotted by our “Big Eyes” team near the mouth of the Chesapeake Bay during the 2025 AMAPPS Survey. Champagne was born in 2009. Credit: NOAA Fisheries/Michelle Klein

Passive Acoustics

The passive acoustics team used a towed hydrophone array to detect and record marine mammal vocalizations in waters deeper than 100 meters. While towing the array behind the vessel, they had roughly 360 detections. They detected at least 11 species, including:

  • A singing humpback whale
  • Sperm whales
  • Two species of beaked whales
  • Pilot whales
  • Risso’s dolphins, striped, common, and bottlenose dolphins
  • Potentially a group of rough-toothed dolphins.

While humpback whale song is not uncommon to hear, it was a big surprise for our acoustics team. “The equipment we used filters out low frequency sounds. Most of the humpback whale song is low frequency so hearing notes above the filter in our recordings is special,” said Annamaria DeAngelis, research biologist and acoustician.

[Humpback whale audio clip]

Listen for a series of “whoops” and “wooo” vocalizations at 03:00, 08:25, 19:00, 24:15, and 34:00 seconds.

In another stand-out recording, the acoustic team may have captured the echolocation clicks of a Gervais’ beaked whale while in the Gulf Stream off Cape Hatteras, North Carolina. “There is a lot of interest in being able to reliably tell this species from True’s beaked whale. We were in their habitat for just a brief time so getting a recording was amazing—like finding a needle in a haystack,” DeAngelis said.

The acoustic team also captured audio of sperm whales using echolocation clicks to search for and find prey. DeAngelis added, “You can get a sense of the animal’s size based on the interval between clicks. A long interval typically indicates a large male, and a shorter interval indicates a female or juvenile male.” These whales change their clicking rates when they home in on prey. “When you hear the change, you’re instantly rooting for the whale’s success. If there’s a long silence after the whale homed in on prey, then it most likely consumed its prey—score 1 for the sperm whale, and 0 for the squid!”

[Sperm whale audio clip]

Sperm whale clip of an individual searching and finding prey. Rapid clicking that sounds like a fluttery sound indicates that the whale is honing in on prey.

Oceanography

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Close up of a small orange crab about the size of a green pea rests on top of person’s open palm.
A small crab megalope caught during the survey. Megalope are a late larval stage in a crab’s metamorphosis from a larvae to an adult. Credit: NOAA Fisheries/Amanda Jacobsen

The oceanography team collected plankton samples using two types of bongo nets. These data help us better understand where and how much prey is available for protected species to eat. The team also deployed a CTD to measure conductivity, temperature, and depth to assess the ocean’s physical, biological, and chemical conditions. This helps us better understand things like ecosystem productivity, fish spawning, larval recruitment, and species distribution. We can then make connections between animal patterns and the ocean conditions found in the Northwest Atlantic. This helps us understand how protected species interact with their environment and interact with human activities occurring in the same waters.

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A slender eel-like fish about a foot long lies atop a metal mesh screen.
Snipe eels live in the ocean twilight zone and can grow up to about 5 feet long and can weigh anywhere between a few grams or ounces to less than 1 pound. Credit: NOAA Fisheries/Amanda Jacobsen

The team saw a range of plankton. Salps—a gelatinous zooplankton—dominated continental shelf and shelf break samples. Samples collected off the continental shelf contained fierce looking fish that live in the ocean twilight zone, about 200–1,000 meters below the ocean’s surface. These include hatchetfish, viperfish, and bristlemouths. They also saw smaller crustaceans like krill, amphipods, and copepods. Two unusual catches were an adult lined seahorse and a snipe eel.

From the Sky

During the aerial survey, the team focused on documenting whales, dolphins, seals, sea turtles, sharks, and other marine animals to generate abundance estimates. The team conducted 32 flights over 26 days, covering about 3,000 nautical miles of tracklines aboard a NOAA Twin Otter plane. They used a combination of traditional unaided-eye methods and a new, innovative camera system that continuously photographs a strip of water directly below the plane. “We’re excited about this new camera system since we may need to use it in future aerial abundance surveys like this one,” said Palka. “We’re currently in the process of developing AI models to assist with identifying potential animals from the thousands of images we collect during a single survey.”

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A close up image of a sea turtle is inset in the upper right corner of another image. A white circle indicates the location of a leatherback sea turtle enlarged on the right. The perspective is from above, looking down.
One of the images captured using the innovative camera system that continuously photographs strips of water directly below the survey plane. Once zoomed in, a small speck in the ocean below can be identified as a loggerhead sea turtle. The team is developing AI models to help identify marine animals captured by the camera system. Credit: NOAA Fisheries

They observed:

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A couple dozen gray seals lie on a beach near the shoreline. The perspective is from above, looking down.
Gray seals captured by the new innovative camera system. Credit: NOAA Fisheries

Teamwork Makes the Dream Work

  • In addition to scientists from the Northeast Fisheries Science Center, a number of individuals within and outside NOAA Fisheries also participated this year, including:
  • NOAA Greater Atlantic Regional Fisheries Office
  • NOAA Southeast Fisheries Science Center
  • NOAA Pacific Islands Fisheries Science Center
  • NOAA Alaska Fisheries Science Center
  • Lily Novak, Massachusetts Maritime Academy
  • Kiersten Newtoff, NOAA Teacher At Sea
  • Intermittent contractors on the aerial and shipboard surveys
  • “Having talented scientists from around the United States involved in our surveys means we get all the expertise needed to efficiently and successfully conduct multi-platform surveys, using a variety of data collection techniques, and targeting multiple species from all trophic levels,” said Palka. “We couldn’t have done it without all these talented people.”
  • NOAA Fisheries and the U.S. Navy provided funding to conduct this year’s series of surveys.

Last updated by Northeast Fisheries Science Center on March 21, 2025